Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46706 * 2 1 4 4 C 1.36935 * 120.00219 * 271.14098 * 3 2 1 5 5 H 1.07997 * 120.00838 * 138.45791 * 4 3 2 6 6 C 1.38821 * 119.99862 * 318.46123 * 4 3 2 7 7 N 1.31609 * 120.00158 * 162.31513 * 6 4 3 8 8 Si 1.86801 * 119.99525 * 342.31263 * 6 4 3 9 9 H 1.48498 * 109.47296 * 95.22809 * 8 6 4 10 10 H 1.48506 * 109.46803 * 215.22276 * 8 6 4 11 11 H 1.48494 * 109.47500 * 335.22447 * 8 6 4 12 12 C 1.46498 * 120.00231 * 91.14294 * 3 2 1 13 13 C 1.53782 * 113.61731 * 136.68734 * 12 3 2 14 14 C 1.53949 * 87.01955 * 89.22963 * 13 12 3 15 15 C 1.53778 * 87.11346 * 25.36519 * 14 13 12 16 16 H 1.09000 * 109.46641 * 179.97438 * 1 2 3 17 17 H 1.09000 * 109.47547 * 300.00492 * 1 2 3 18 18 H 1.09003 * 109.46878 * 60.00747 * 1 2 3 19 19 H 1.08993 * 109.47877 * 239.99703 * 2 1 3 20 20 H 1.09003 * 109.46878 * 119.99253 * 2 1 3 21 21 H 0.97005 * 120.00489 * 180.02562 * 7 6 4 22 22 H 1.09001 * 112.85023 * 5.49290 * 12 3 2 23 23 H 1.09002 * 113.61612 * 203.75023 * 13 12 3 24 24 H 1.09000 * 113.61433 * 334.65434 * 13 12 3 25 25 H 1.09001 * 113.54240 * 270.81460 * 14 13 12 26 26 H 1.09007 * 113.66811 * 139.93069 * 14 13 12 27 27 H 1.09001 * 113.61796 * 220.08787 * 15 14 13 28 28 H 1.09006 * 113.69149 * 89.19585 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2242 2.0347 -1.1856 5 1 1.9294 3.0683 -1.2910 6 6 2.8119 1.3685 -2.2523 7 7 2.7010 1.8515 -3.4716 8 14 3.7603 -0.2135 -1.9571 9 1 2.8669 -1.3769 -2.1887 10 1 4.9131 -0.2812 -2.8909 11 1 4.2551 -0.2403 -0.5572 12 6 2.2863 2.0635 1.2684 13 6 3.5963 2.8688 1.2700 14 6 2.7718 4.0584 0.7455 15 6 1.5500 3.4058 1.4136 16 1 -0.3632 -1.0277 -0.0005 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5137 -0.8901 19 1 1.8935 -0.5138 -0.8899 20 1 1.8933 -0.5137 0.8901 21 1 3.1113 1.3858 -4.2170 22 1 2.1752 1.4088 2.1329 23 1 4.0092 3.0291 2.2660 24 1 4.3357 2.5013 0.5584 25 1 2.7062 4.0969 -0.3418 26 1 3.0525 5.0143 1.1878 27 1 0.6396 3.4711 0.8177 28 1 1.4011 3.7124 2.4489 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = 43.351147 kcal Electronic energy + Delta-G solvation = -10352.096586 eV Core-core repulsion = 8597.702275 eV Total energy + Delta-G solvation = -1754.394311 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.35319 -34.32925 -31.66643 -28.77009 -25.29841 -24.66194 -22.78038 -21.24807 -18.17173 -16.55184 -15.28570 -14.97468 -14.01083 -13.32993 -12.98410 -12.67618 -12.11035 -11.59331 -11.37537 -11.25260 -11.15964 -10.64615 -10.56969 -10.02183 -9.59414 -9.50543 -9.28939 -9.12276 -8.46031 -6.66171 -5.93984 -3.42811 3.33162 3.48125 3.54668 4.55255 4.94660 5.32407 5.66746 5.73416 5.90539 5.94338 5.98613 6.28940 6.37284 6.40732 6.48422 6.56627 6.60215 6.83557 6.86318 7.07108 7.11104 7.19238 7.38120 8.14970 8.50902 9.06354 9.75903 10.19521 11.20095 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.042021 B = 0.023365 C = 0.019512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.166646 B = 1198.087331 C = 1434.684439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.087 0.913 6 C 0.035 3.965 7 N -0.905 5.905 8 Si 0.883 3.117 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.269 1.269 12 C 0.161 3.839 13 C -0.157 4.157 14 C -0.136 4.136 15 C -0.163 4.163 16 H 0.036 0.964 17 H 0.043 0.957 18 H 0.059 0.941 19 H 0.049 0.951 20 H 0.037 0.963 21 H 0.262 0.738 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -1.215 8.164 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.311 5.311 4 C -0.392 4.392 5 H 0.104 0.896 6 C -0.165 4.165 7 N -0.547 5.547 8 Si 0.714 3.286 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.193 1.193 12 C 0.053 3.947 13 C -0.197 4.197 14 C -0.173 4.173 15 C -0.203 4.203 16 H 0.055 0.945 17 H 0.062 0.938 18 H 0.078 0.922 19 H 0.067 0.933 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.784 -1.251 7.972 8.107 hybrid contribution 0.544 -0.859 0.004 1.017 sum -0.240 -2.111 7.975 8.254 Atomic orbital electron populations 1.22247 0.98941 0.99225 1.01766 1.21125 0.92688 0.86595 0.98745 1.43941 1.74571 1.10903 1.01655 1.18839 1.34685 0.98415 0.87257 0.89590 1.25564 0.97425 0.97996 0.95495 1.69816 1.45575 1.40898 0.98399 0.86813 0.79870 0.84019 0.77928 1.21522 1.23163 1.19335 1.21283 0.93672 0.91457 0.88289 1.23290 0.98703 0.98505 0.99178 1.23016 0.96375 0.95156 1.02730 1.23420 0.98462 0.99805 0.98624 0.94460 0.93754 0.92226 0.93286 0.94447 0.92776 0.92654 0.92146 0.91315 0.87731 0.94280 0.91866 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 15 2 C 0.13 2.95 5.24 -4.04 -0.02 2.93 15 3 N -0.59 -14.09 2.27 -164.74 -0.37 -14.46 15 4 C -0.26 -7.22 8.02 -15.06 -0.12 -7.34 15 5 H 0.09 2.52 5.73 -52.49 -0.30 2.22 15 6 C 0.04 1.02 5.36 -17.43 -0.09 0.92 15 7 N -0.91 -27.60 13.97 55.49 0.78 -26.82 15 8 Si 0.88 22.56 24.91 -169.99 -4.23 18.33 15 9 H -0.29 -7.17 6.74 56.52 0.38 -6.79 15 10 H -0.30 -7.88 7.11 56.52 0.40 -7.48 15 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 12 C 0.16 3.33 4.66 -67.12 -0.31 3.02 15 13 C -0.16 -3.12 7.48 -25.83 -0.19 -3.31 15 14 C -0.14 -2.69 7.48 -25.83 -0.19 -2.88 15 15 C -0.16 -3.10 7.57 -25.92 -0.20 -3.30 15 16 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 17 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 18 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 19 H 0.05 1.18 3.39 -51.93 -0.18 1.00 15 20 H 0.04 0.74 7.95 -51.93 -0.41 0.33 15 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.06 1.04 7.96 -51.93 -0.41 0.63 15 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.07 1.53 8.01 -51.93 -0.42 1.11 15 25 H 0.10 2.41 5.26 -51.93 -0.27 2.13 15 26 H 0.04 0.68 8.14 -51.92 -0.42 0.26 15 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 LS Contribution 221.74 15.07 3.34 3.34 Total: -1.00 -29.20 221.74 -5.35 -34.54 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.11 Total: -2.17 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.75 Total: -12.76 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.40 Total: -41.28 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.23 Total: 18.33 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.20 -5.35 -34.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.894 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds