Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46706 * 2 1 4 4 C 1.36935 * 120.00219 * 271.14098 * 3 2 1 5 5 H 1.07997 * 120.00838 * 138.45791 * 4 3 2 6 6 C 1.38821 * 119.99862 * 318.46123 * 4 3 2 7 7 N 1.31609 * 120.00158 * 162.31513 * 6 4 3 8 8 Si 1.86801 * 119.99525 * 342.31263 * 6 4 3 9 9 H 1.48498 * 109.47296 * 95.22809 * 8 6 4 10 10 H 1.48506 * 109.46803 * 215.22276 * 8 6 4 11 11 H 1.48494 * 109.47500 * 335.22447 * 8 6 4 12 12 C 1.46498 * 120.00231 * 91.14294 * 3 2 1 13 13 C 1.53782 * 113.61731 * 136.68734 * 12 3 2 14 14 C 1.53949 * 87.01955 * 89.22963 * 13 12 3 15 15 C 1.53778 * 87.11346 * 25.36519 * 14 13 12 16 16 H 1.09000 * 109.46641 * 179.97438 * 1 2 3 17 17 H 1.09000 * 109.47547 * 300.00492 * 1 2 3 18 18 H 1.09003 * 109.46878 * 60.00747 * 1 2 3 19 19 H 1.08993 * 109.47877 * 239.99703 * 2 1 3 20 20 H 1.09003 * 109.46878 * 119.99253 * 2 1 3 21 21 H 0.97005 * 120.00489 * 180.02562 * 7 6 4 22 22 H 1.09001 * 112.85023 * 5.49290 * 12 3 2 23 23 H 1.09002 * 113.61612 * 203.75023 * 13 12 3 24 24 H 1.09000 * 113.61433 * 334.65434 * 13 12 3 25 25 H 1.09001 * 113.54240 * 270.81460 * 14 13 12 26 26 H 1.09007 * 113.66811 * 139.93069 * 14 13 12 27 27 H 1.09001 * 113.61796 * 220.08787 * 15 14 13 28 28 H 1.09006 * 113.69149 * 89.19585 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2242 2.0347 -1.1856 5 1 1.9294 3.0683 -1.2910 6 6 2.8119 1.3685 -2.2523 7 7 2.7010 1.8515 -3.4716 8 14 3.7603 -0.2135 -1.9571 9 1 2.8669 -1.3769 -2.1887 10 1 4.9131 -0.2812 -2.8909 11 1 4.2551 -0.2403 -0.5572 12 6 2.2863 2.0635 1.2684 13 6 3.5963 2.8688 1.2700 14 6 2.7718 4.0584 0.7455 15 6 1.5500 3.4058 1.4136 16 1 -0.3632 -1.0277 -0.0005 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5137 -0.8901 19 1 1.8935 -0.5138 -0.8899 20 1 1.8933 -0.5137 0.8901 21 1 3.1113 1.3858 -4.2170 22 1 2.1752 1.4088 2.1329 23 1 4.0092 3.0291 2.2660 24 1 4.3357 2.5013 0.5584 25 1 2.7062 4.0969 -0.3418 26 1 3.0525 5.0143 1.1878 27 1 0.6396 3.4711 0.8177 28 1 1.4011 3.7124 2.4489 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261159135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = 25.063763 kcal Electronic energy + Delta-G solvation = -10352.889586 eV Core-core repulsion = 8597.702275 eV Total energy + Delta-G solvation = -1755.187311 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.02885 -36.11346 -33.74555 -30.55223 -27.18108 -26.21281 -24.51087 -23.08428 -19.88860 -18.53317 -17.20383 -16.69419 -15.74432 -15.06592 -14.76563 -14.55379 -14.00488 -13.23147 -13.12091 -12.94378 -12.76007 -12.48643 -12.43941 -11.87316 -11.40651 -11.24854 -11.00216 -10.74832 -10.56406 -8.60000 -8.12731 -5.58427 1.29670 1.40281 1.51664 2.44389 3.10689 3.30186 4.06666 4.15575 4.28804 4.35262 4.39334 4.69677 4.74347 4.89368 4.97569 5.02035 5.07252 5.18246 5.25477 5.45812 5.48922 5.53528 5.77826 6.05961 6.35546 7.08740 7.70771 8.13385 9.05018 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.042021 B = 0.023365 C = 0.019512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.166646 B = 1198.087331 C = 1434.684439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 N -0.604 5.604 4 C -0.238 4.238 5 H 0.055 0.945 6 C -0.025 4.025 7 N -0.957 5.957 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.314 1.314 11 H -0.258 1.258 12 C 0.146 3.854 13 C -0.151 4.151 14 C -0.141 4.141 15 C -0.148 4.148 16 H 0.067 0.933 17 H 0.059 0.941 18 H 0.028 0.972 19 H 0.028 0.972 20 H 0.068 0.932 21 H 0.260 0.740 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -2.123 10.968 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.002 4.002 3 N -0.326 5.326 4 C -0.368 4.368 5 H 0.072 0.928 6 C -0.220 4.220 7 N -0.602 5.602 8 Si 0.773 3.227 9 H -0.205 1.205 10 H -0.243 1.243 11 H -0.182 1.182 12 C 0.039 3.961 13 C -0.190 4.190 14 C -0.178 4.178 15 C -0.188 4.188 16 H 0.085 0.915 17 H 0.078 0.922 18 H 0.047 0.953 19 H 0.045 0.955 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.118 0.882 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.851 -2.169 10.823 11.071 hybrid contribution 0.504 -0.492 -0.783 1.053 sum -0.348 -2.661 10.039 10.392 Atomic orbital electron populations 1.22117 0.97108 1.00972 1.00965 1.21295 0.94261 0.85472 0.99136 1.44123 1.75103 1.11657 1.01684 1.18732 1.32285 0.97216 0.88605 0.92761 1.26158 0.99058 1.01516 0.95278 1.69948 1.47841 1.43057 0.99327 0.85824 0.78174 0.80868 0.77802 1.20503 1.24329 1.18191 1.21579 0.94424 0.92543 0.87539 1.23306 0.97521 0.97767 1.00406 1.22894 0.97600 0.96966 1.00354 1.23350 0.96666 0.98472 1.00291 0.91458 0.92224 0.95291 0.95451 0.91326 0.93127 0.89484 0.88170 0.94463 0.92114 0.91621 0.94125 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.24 71.98 0.74 -4.82 15 2 C 0.12 5.09 5.24 86.38 0.45 5.54 15 3 N -0.60 -27.97 2.27 -675.10 -1.53 -29.50 15 4 C -0.24 -13.30 8.02 84.04 0.67 -12.63 15 5 H 0.05 3.35 5.73 -2.91 -0.02 3.33 15 6 C -0.02 -1.46 5.36 84.87 0.46 -1.00 15 7 N -0.96 -60.58 13.97 21.65 0.30 -60.27 15 8 Si 0.94 47.11 24.91 68.60 1.71 48.82 15 9 H -0.28 -13.27 6.74 99.48 0.67 -12.60 15 10 H -0.31 -16.05 7.11 99.48 0.71 -15.35 15 11 H -0.26 -12.23 7.11 99.48 0.71 -11.52 15 12 C 0.15 5.56 4.66 45.52 0.21 5.78 15 13 C -0.15 -5.57 7.48 31.18 0.23 -5.34 15 14 C -0.14 -5.39 7.48 31.18 0.23 -5.16 15 15 C -0.15 -5.21 7.57 31.12 0.24 -4.98 15 16 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 17 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 18 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 19 H 0.03 1.26 3.39 -2.39 -0.01 1.25 15 20 H 0.07 2.42 7.95 -2.39 -0.02 2.40 15 21 H 0.26 15.70 8.31 -92.70 -0.77 14.93 15 22 H 0.09 2.80 7.96 -2.39 -0.02 2.78 15 23 H 0.10 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.04 1.60 8.01 -2.39 -0.02 1.58 15 25 H 0.06 2.88 5.26 -2.39 -0.01 2.87 15 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 15 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.10 2.78 8.14 -2.38 -0.02 2.76 15 Total: -1.00 -64.16 221.74 4.79 -59.37 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.08 Total: 4.19 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.23 Total: -22.60 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.23 Total: -89.77 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.71 Total: 48.82 kcal Total: -64.16 4.79 -59.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.432 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds