Wall clock time and date at job start Mon Mar 30 2020 01:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48810 * 111.18438 * 2 1 4 4 C 1.54940 * 103.34863 * 159.50458 * 3 2 1 5 5 C 1.54591 * 102.92163 * 322.68608 * 4 3 2 6 6 C 1.47908 * 111.00008 * 117.33057 * 2 1 3 7 7 C 1.53002 * 109.91850 * 333.71273 * 6 2 1 8 8 C 1.50704 * 109.91229 * 94.80621 * 6 2 1 9 9 H 1.08000 * 119.99486 * 233.57542 * 8 6 2 10 10 C 1.37869 * 120.00201 * 53.85513 * 8 6 2 11 11 N 1.31518 * 120.00125 * 4.65908 * 10 8 6 12 12 Si 1.86799 * 120.00020 * 184.66158 * 10 8 6 13 13 H 1.48495 * 109.47110 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47362 * 119.99886 * 12 10 8 15 15 H 1.48501 * 109.47217 * 239.99797 * 12 10 8 16 16 H 1.09007 * 109.47411 * 307.83012 * 1 2 3 17 17 H 1.08995 * 109.47078 * 67.83658 * 1 2 3 18 18 H 1.09000 * 109.46986 * 187.83374 * 1 2 3 19 19 H 1.09004 * 110.52095 * 41.06999 * 3 2 1 20 20 H 1.09007 * 110.83691 * 278.08890 * 3 2 1 21 21 H 1.09007 * 110.71832 * 204.32470 * 4 3 2 22 22 H 1.09001 * 110.72437 * 81.05126 * 4 3 2 23 23 H 1.09001 * 110.31041 * 263.04188 * 5 4 3 24 24 H 1.09005 * 110.30489 * 140.87335 * 5 4 3 25 25 H 1.09001 * 109.46969 * 181.80291 * 7 6 2 26 26 H 1.09001 * 109.46689 * 301.80218 * 7 6 2 27 27 H 1.08994 * 109.47534 * 61.79557 * 7 6 2 28 28 H 0.97003 * 119.99810 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2974 0.1061 1.5980 6 6 1.9990 -0.6340 1.2267 7 6 0.9818 -0.5037 2.3621 8 6 2.2938 -2.0888 0.9663 9 1 1.8716 -2.8484 1.6075 10 6 3.1071 -2.4496 -0.0868 11 7 3.6992 -1.5228 -0.8080 12 14 3.3679 -4.2550 -0.4895 13 1 2.5968 -5.0914 0.4649 14 1 2.9028 -4.5257 -1.8735 15 1 4.8121 -4.5830 -0.3796 16 1 -0.3634 0.6303 0.8117 17 1 -0.3633 0.3877 -0.9517 18 1 -0.3633 -1.0181 0.1401 19 1 1.4272 2.0220 0.6707 20 1 2.0132 1.8009 -1.0086 21 1 3.8148 2.1354 0.9775 22 1 4.1177 0.8831 -0.2713 23 1 3.2096 0.5497 2.5898 24 1 4.1459 -0.5773 1.5621 25 1 1.3926 -0.9446 3.2704 26 1 0.7645 0.5502 2.5359 27 1 0.0636 -1.0236 2.0889 28 1 4.2711 -1.7768 -1.5493 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:35 Heat of formation + Delta-G solvation = 9.101257 kcal Electronic energy + Delta-G solvation = -10548.670917 eV Core-core repulsion = 8792.791420 eV Total energy + Delta-G solvation = -1755.879498 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.10074 -32.26834 -30.89553 -29.85081 -25.25306 -24.45611 -23.48127 -19.78453 -18.41824 -16.14211 -14.69420 -14.14934 -13.93690 -13.26189 -12.63683 -12.19156 -11.82496 -11.32181 -10.93960 -10.81048 -10.79639 -10.46213 -10.24137 -9.97891 -9.82288 -9.71599 -9.03057 -8.81560 -8.16448 -6.76213 -5.74835 -3.86408 3.38681 3.47291 3.50415 4.57047 5.28057 5.69433 6.08403 6.10497 6.21087 6.37754 6.44645 6.50008 6.56903 6.60653 6.63784 6.83599 6.91861 7.00624 7.15515 7.39532 7.48550 7.87672 8.03251 8.42863 8.59760 8.69699 9.22009 9.79497 11.27876 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053075 B = 0.020864 C = 0.019215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.424075 B = 1341.691007 C = 1456.832989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.473 5.473 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.097 4.097 6 C 0.217 3.783 7 C -0.157 4.157 8 C -0.517 4.517 9 H 0.051 0.949 10 C 0.087 3.913 11 N -0.846 5.846 12 Si 0.878 3.122 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.288 1.288 16 H 0.006 0.994 17 H 0.041 0.959 18 H 0.061 0.939 19 H 0.011 0.989 20 H 0.055 0.945 21 H 0.031 0.969 22 H 0.085 0.915 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 3.339 2.038 4.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.197 5.197 3 C -0.089 4.089 4 C -0.145 4.145 5 C -0.136 4.136 6 C 0.130 3.870 7 C -0.216 4.216 8 C -0.555 4.555 9 H 0.070 0.930 10 C -0.118 4.118 11 N -0.480 5.480 12 Si 0.706 3.294 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.214 1.214 16 H 0.024 0.976 17 H 0.060 0.940 18 H 0.080 0.920 19 H 0.029 0.971 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.104 0.896 23 H 0.041 0.959 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.902 3.083 1.407 3.886 hybrid contribution -0.239 -0.529 0.369 0.687 sum -2.140 2.554 1.775 3.776 Atomic orbital electron populations 1.22390 0.91807 1.00386 0.97873 1.65251 1.03872 1.10674 1.39856 1.23070 0.95953 0.91744 0.98084 1.22292 0.96495 0.96037 0.99722 1.22316 1.00784 0.96431 0.94079 1.19401 0.89148 0.94679 0.83786 1.22443 1.00657 0.98002 1.00492 1.20873 1.30430 0.90238 1.13985 0.93037 1.24848 0.95076 0.95983 0.95940 1.70052 1.28568 1.31319 1.18109 0.86804 0.77499 0.86871 0.78214 1.20112 1.21201 1.21403 0.97570 0.94041 0.91994 0.97052 0.92689 0.94992 0.89633 0.95935 0.91126 0.93736 0.95625 0.93497 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.34 60.06 0.50 1.03 15 2 N -0.47 -11.63 4.26 -224.23 -0.96 -12.59 15 3 C 0.04 0.88 6.57 -1.74 -0.01 0.87 15 4 C -0.11 -2.40 6.59 -24.87 -0.16 -2.57 15 5 C -0.10 -2.33 5.50 -25.38 -0.14 -2.47 15 6 C 0.22 5.43 0.50 -131.68 -0.07 5.36 15 7 C -0.16 -3.45 6.97 37.16 0.26 -3.19 15 8 C -0.52 -14.27 8.08 -34.44 -0.28 -14.55 15 9 H 0.05 1.43 7.76 -52.49 -0.41 1.02 15 10 C 0.09 2.42 5.04 -17.82 -0.09 2.33 15 11 N -0.85 -23.78 10.37 55.43 0.57 -23.21 15 12 Si 0.88 21.42 29.54 -169.99 -5.02 16.39 15 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 16 H 0.01 0.12 6.53 -51.93 -0.34 -0.22 15 17 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 18 H 0.06 1.35 7.45 -51.93 -0.39 0.97 15 19 H 0.01 0.24 7.89 -51.93 -0.41 -0.17 15 20 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.03 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.09 2.08 7.28 -51.93 -0.38 1.70 15 23 H 0.02 0.49 7.68 -51.93 -0.40 0.09 15 24 H 0.07 1.84 7.18 -51.93 -0.37 1.47 15 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.02 0.51 7.64 -51.93 -0.40 0.12 15 27 H 0.05 1.00 6.55 -51.93 -0.34 0.66 15 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 219.94 15.07 3.31 3.31 Total: -1.00 -28.46 219.94 -6.33 -34.79 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -4.26 Total: -5.51 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.01 Total: -13.18 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.38 Total: -35.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.46 -6.33 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.890 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds