Wall clock time and date at job start Mon Mar 30 2020 01:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47842 * 111.00057 * 2 1 4 4 C 1.54909 * 104.79990 * 146.36085 * 3 2 1 5 5 C 1.55137 * 101.65055 * 322.93168 * 4 3 2 6 6 C 1.47446 * 110.99817 * 120.83881 * 2 1 3 7 7 C 1.52997 * 109.88564 * 117.33854 * 6 2 1 8 8 C 1.50693 * 109.89143 * 356.31256 * 6 2 1 9 9 H 1.08009 * 120.00067 * 1.67235 * 8 6 2 10 10 C 1.37874 * 120.00267 * 181.66704 * 8 6 2 11 11 N 1.31514 * 119.99908 * 7.05015 * 10 8 6 12 12 Si 1.86804 * 120.00389 * 187.04073 * 10 8 6 13 13 H 1.48507 * 109.46625 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47102 * 119.99939 * 12 10 8 15 15 H 1.48494 * 109.47340 * 240.00468 * 12 10 8 16 16 H 1.09000 * 109.47429 * 301.14731 * 1 2 3 17 17 H 1.09005 * 109.47115 * 61.14646 * 1 2 3 18 18 H 1.08995 * 109.47073 * 181.14704 * 1 2 3 19 19 H 1.09002 * 110.37267 * 265.19522 * 3 2 1 20 20 H 1.09007 * 110.37568 * 27.53443 * 3 2 1 21 21 H 1.08998 * 110.98688 * 81.01813 * 4 3 2 22 22 H 1.08998 * 110.99443 * 204.80190 * 4 3 2 23 23 H 1.09004 * 110.70426 * 277.26523 * 5 4 3 24 24 H 1.08998 * 110.70565 * 154.03658 * 5 4 3 25 25 H 1.09004 * 109.47163 * 58.54648 * 7 6 2 26 26 H 1.09002 * 109.47109 * 298.54518 * 7 6 2 27 27 H 1.09004 * 109.47510 * 178.54386 * 7 6 2 28 28 H 0.96997 * 120.00007 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 0.8297 5 6 2.9158 0.2823 1.9315 6 6 1.9973 -0.7057 1.1819 7 6 2.8007 -1.9307 0.7406 8 6 0.8609 -1.1325 2.0747 9 1 -0.1595 -0.9292 1.7846 10 6 1.1235 -1.7828 3.2618 11 7 2.3632 -1.9079 3.6827 12 14 -0.2814 -2.4858 4.2725 13 1 -1.5697 -2.2144 3.5853 14 1 -0.0993 -3.9522 4.4206 15 1 -0.2923 -1.8502 5.6145 16 1 -0.3634 0.5315 0.8795 17 1 -0.3633 0.4959 -0.9001 18 1 -0.3633 -1.0274 0.0206 19 1 2.2147 1.7038 -1.0182 20 1 1.2889 2.0593 0.4724 21 1 4.1301 0.9282 0.2244 22 1 3.5498 2.2722 1.2635 23 1 2.3743 0.7748 2.7392 24 1 3.8000 -0.2278 2.3138 25 1 3.6160 -1.6153 0.0895 26 1 2.1489 -2.6172 0.2002 27 1 3.2095 -2.4324 1.6177 28 1 2.5479 -2.3650 4.5180 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:37 Heat of formation + Delta-G solvation = 9.021953 kcal Electronic energy + Delta-G solvation = -10464.627841 eV Core-core repulsion = 8708.744905 eV Total energy + Delta-G solvation = -1755.882936 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.20171 -32.79130 -31.04597 -29.45782 -25.63472 -24.21746 -23.57395 -20.05588 -18.72569 -15.76438 -15.01649 -14.52626 -14.00641 -13.20096 -12.46641 -12.31117 -11.58616 -11.42512 -11.24385 -10.99349 -10.75705 -10.55970 -10.13936 -10.08096 -9.69739 -9.61967 -9.29624 -8.73604 -8.28314 -7.11826 -5.99524 -4.05597 3.27749 3.36472 3.39769 4.41807 5.22079 5.32136 5.76463 5.94740 6.10243 6.33894 6.45735 6.57523 6.65991 6.76403 6.89031 6.96293 7.11457 7.18757 7.43902 7.58268 7.59791 7.81571 7.98391 8.13771 8.38470 8.61395 9.01475 9.60447 11.04870 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057419 B = 0.019682 C = 0.017356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.525854 B = 1422.314285 C = 1612.846591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.536 5.536 3 C 0.047 3.953 4 C -0.141 4.141 5 C -0.096 4.096 6 C 0.219 3.781 7 C -0.109 4.109 8 C -0.538 4.538 9 H 0.073 0.927 10 C 0.069 3.931 11 N -0.882 5.882 12 Si 0.887 3.113 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.286 1.286 16 H 0.027 0.973 17 H 0.031 0.969 18 H 0.066 0.934 19 H 0.056 0.944 20 H 0.031 0.969 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 3.326 -3.281 4.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.260 5.260 3 C -0.082 4.082 4 C -0.179 4.179 5 C -0.135 4.135 6 C 0.132 3.868 7 C -0.167 4.167 8 C -0.577 4.577 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.520 5.520 12 Si 0.716 3.284 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.212 1.212 16 H 0.046 0.954 17 H 0.050 0.950 18 H 0.085 0.915 19 H 0.074 0.926 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.260 2.978 -3.581 4.665 hybrid contribution -1.016 -0.003 1.412 1.739 sum -1.276 2.975 -2.170 3.897 Atomic orbital electron populations 1.22286 0.89544 1.01299 0.97415 1.63650 1.07159 1.11912 1.43305 1.22879 0.95771 0.91383 0.98146 1.22823 0.96960 0.99354 0.98801 1.22611 0.99871 0.95341 0.95669 1.19291 0.92689 0.90484 0.84378 1.21599 0.97259 0.98379 0.99507 1.21892 0.93525 1.38050 1.04208 0.90892 1.24928 0.95367 0.95865 0.97242 1.69989 1.18109 1.42426 1.21494 0.86614 0.82825 0.78998 0.80006 1.19869 1.20962 1.21236 0.95429 0.95040 0.91479 0.92556 0.95018 0.92269 0.92974 0.92862 0.91703 0.96802 0.95411 0.91029 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 7.98 60.06 0.48 1.40 15 2 N -0.54 -12.26 5.07 -225.25 -1.14 -13.40 15 3 C 0.05 0.94 6.73 -2.30 -0.02 0.92 15 4 C -0.14 -2.84 7.08 -24.59 -0.17 -3.01 15 5 C -0.10 -2.31 4.79 -24.91 -0.12 -2.43 15 6 C 0.22 5.52 0.84 -131.77 -0.11 5.41 15 7 C -0.11 -2.73 8.48 37.16 0.31 -2.41 15 8 C -0.54 -14.53 6.82 -34.44 -0.23 -14.77 15 9 H 0.07 1.95 4.67 -52.48 -0.25 1.70 15 10 C 0.07 1.86 5.14 -17.82 -0.09 1.77 15 11 N -0.88 -24.53 10.48 55.43 0.58 -23.95 15 12 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 16 H 0.03 0.61 6.86 -51.93 -0.36 0.25 15 17 H 0.03 0.58 8.14 -51.93 -0.42 0.15 15 18 H 0.07 1.47 7.06 -51.93 -0.37 1.11 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 20 H 0.03 0.63 7.76 -51.93 -0.40 0.22 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.05 1.38 7.85 -51.93 -0.41 0.97 15 24 H 0.06 1.64 7.58 -51.93 -0.39 1.24 15 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 27 H 0.07 1.90 6.45 -51.93 -0.34 1.57 15 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 219.65 15.07 3.31 3.31 Total: -1.00 -27.74 219.65 -6.40 -34.14 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.18 Total: -3.08 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 0.05 Total: -13.12 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.56 Total: -37.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.74 -6.40 -34.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.164 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds