Wall clock time and date at job start Mon Mar 30 2020 01:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47842 * 111.00057 * 2 1 4 4 C 1.54909 * 104.79990 * 146.36085 * 3 2 1 5 5 C 1.55137 * 101.65055 * 322.93168 * 4 3 2 6 6 C 1.47446 * 110.99817 * 120.83881 * 2 1 3 7 7 C 1.52997 * 109.88564 * 117.33854 * 6 2 1 8 8 C 1.50693 * 109.89143 * 356.31256 * 6 2 1 9 9 H 1.08009 * 120.00067 * 1.67235 * 8 6 2 10 10 C 1.37874 * 120.00267 * 181.66704 * 8 6 2 11 11 N 1.31514 * 119.99908 * 7.05015 * 10 8 6 12 12 Si 1.86804 * 120.00389 * 187.04073 * 10 8 6 13 13 H 1.48507 * 109.46625 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47102 * 119.99939 * 12 10 8 15 15 H 1.48494 * 109.47340 * 240.00468 * 12 10 8 16 16 H 1.09000 * 109.47429 * 301.14731 * 1 2 3 17 17 H 1.09005 * 109.47115 * 61.14646 * 1 2 3 18 18 H 1.08995 * 109.47073 * 181.14704 * 1 2 3 19 19 H 1.09002 * 110.37267 * 265.19522 * 3 2 1 20 20 H 1.09007 * 110.37568 * 27.53443 * 3 2 1 21 21 H 1.08998 * 110.98688 * 81.01813 * 4 3 2 22 22 H 1.08998 * 110.99443 * 204.80190 * 4 3 2 23 23 H 1.09004 * 110.70426 * 277.26523 * 5 4 3 24 24 H 1.08998 * 110.70565 * 154.03658 * 5 4 3 25 25 H 1.09004 * 109.47163 * 58.54648 * 7 6 2 26 26 H 1.09002 * 109.47109 * 298.54518 * 7 6 2 27 27 H 1.09004 * 109.47510 * 178.54386 * 7 6 2 28 28 H 0.96997 * 120.00007 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 0.8297 5 6 2.9158 0.2823 1.9315 6 6 1.9973 -0.7057 1.1819 7 6 2.8007 -1.9307 0.7406 8 6 0.8609 -1.1325 2.0747 9 1 -0.1595 -0.9292 1.7846 10 6 1.1235 -1.7828 3.2618 11 7 2.3632 -1.9079 3.6827 12 14 -0.2814 -2.4858 4.2725 13 1 -1.5697 -2.2144 3.5853 14 1 -0.0993 -3.9522 4.4206 15 1 -0.2923 -1.8502 5.6145 16 1 -0.3634 0.5315 0.8795 17 1 -0.3633 0.4959 -0.9001 18 1 -0.3633 -1.0274 0.0206 19 1 2.2147 1.7038 -1.0182 20 1 1.2889 2.0593 0.4724 21 1 4.1301 0.9282 0.2244 22 1 3.5498 2.2722 1.2635 23 1 2.3743 0.7748 2.7392 24 1 3.8000 -0.2278 2.3138 25 1 3.6160 -1.6153 0.0895 26 1 2.1489 -2.6172 0.2002 27 1 3.2095 -2.4324 1.6177 28 1 2.5479 -2.3650 4.5180 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:36 Heat of formation + Delta-G solvation = -8.804560 kcal Electronic energy + Delta-G solvation = -10465.400857 eV Core-core repulsion = 8708.744905 eV Total energy + Delta-G solvation = -1756.655952 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.00596 -34.78194 -32.78739 -31.38318 -27.59463 -26.10335 -25.38076 -21.74883 -20.67017 -17.72636 -16.95497 -16.28220 -15.81260 -15.00664 -14.23772 -14.20751 -13.41888 -13.31732 -13.11995 -12.83304 -12.64869 -12.42018 -11.96428 -11.83759 -11.51809 -11.46420 -11.18856 -10.73307 -10.31217 -8.92436 -8.04253 -6.16734 1.38124 1.41959 1.50992 2.43331 3.20214 3.55090 4.10054 4.29020 4.45198 4.73642 4.82467 4.88336 4.89983 5.07459 5.12444 5.15362 5.22453 5.32840 5.51635 5.59432 5.66089 5.79092 6.08395 6.16455 6.44487 6.73189 7.01327 7.52080 8.97850 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057419 B = 0.019682 C = 0.017356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.525854 B = 1422.314285 C = 1612.846591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.546 5.546 3 C 0.046 3.954 4 C -0.131 4.131 5 C -0.092 4.092 6 C 0.208 3.792 7 C -0.099 4.099 8 C -0.553 4.553 9 H 0.071 0.929 10 C 0.024 3.976 11 N -0.905 5.905 12 Si 0.945 3.055 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.285 1.285 16 H 0.014 0.986 17 H 0.064 0.936 18 H 0.052 0.948 19 H 0.086 0.914 20 H 0.035 0.965 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 4.128 -4.114 5.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.270 5.270 3 C -0.082 4.082 4 C -0.169 4.169 5 C -0.131 4.131 6 C 0.120 3.880 7 C -0.158 4.158 8 C -0.591 4.591 9 H 0.089 0.911 10 C -0.176 4.176 11 N -0.543 5.543 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.211 1.211 16 H 0.033 0.967 17 H 0.082 0.918 18 H 0.071 0.929 19 H 0.104 0.896 20 H 0.053 0.947 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.645 3.790 -4.427 5.863 hybrid contribution -0.890 -0.235 1.643 1.883 sum -1.536 3.555 -2.784 4.769 Atomic orbital electron populations 1.22227 0.88761 1.00665 0.98395 1.63637 1.07969 1.13554 1.41836 1.22999 0.95462 0.89896 0.99862 1.22785 0.97432 0.99309 0.97335 1.22404 0.98518 0.96101 0.96084 1.19319 0.92492 0.90972 0.85216 1.21458 0.97478 0.98273 0.98578 1.22219 0.94154 1.38046 1.04704 0.91066 1.25591 0.97361 0.96338 0.98352 1.70100 1.19514 1.42965 1.21768 0.85715 0.80433 0.78171 0.78540 1.19417 1.20820 1.21110 0.96728 0.91753 0.92905 0.89620 0.94682 0.91194 0.90475 0.95512 0.93712 0.95412 0.96033 0.93283 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.96 7.98 127.69 1.02 2.98 15 2 N -0.55 -23.87 5.07 -866.56 -4.39 -28.27 15 3 C 0.05 1.69 6.73 86.77 0.58 2.27 15 4 C -0.13 -4.91 7.08 31.98 0.23 -4.68 15 5 C -0.09 -4.39 4.79 31.77 0.15 -4.24 15 6 C 0.21 10.37 0.84 3.12 0.00 10.38 15 7 C -0.10 -4.95 8.48 71.98 0.61 -4.34 15 8 C -0.55 -29.84 6.82 25.60 0.17 -29.66 15 9 H 0.07 3.79 4.67 -2.91 -0.01 3.78 15 10 C 0.02 1.30 5.14 84.65 0.44 1.73 15 11 N -0.91 -50.93 10.48 21.45 0.22 -50.71 15 12 Si 0.94 43.47 29.54 68.60 2.03 45.50 15 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 16 H 0.01 0.61 6.86 -2.39 -0.02 0.60 15 17 H 0.06 2.18 8.14 -2.38 -0.02 2.16 15 18 H 0.05 2.26 7.06 -2.39 -0.02 2.25 15 19 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 20 H 0.03 1.28 7.76 -2.38 -0.02 1.26 15 21 H 0.07 2.48 8.14 -2.39 -0.02 2.47 15 22 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.03 1.37 7.85 -2.39 -0.02 1.36 15 24 H 0.04 2.27 7.58 -2.39 -0.02 2.25 15 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 27 H 0.05 2.63 6.45 -2.38 -0.02 2.62 15 28 H 0.26 13.93 8.31 -92.71 -0.77 13.16 15 Total: -1.00 -57.71 219.65 2.18 -55.53 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.12 Total: 3.50 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 3.20 Total: -25.56 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -4.17 Total: -78.97 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -57.71 2.18 -55.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.730 kcal (2) G-P(sol) polarization free energy of solvation -57.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds