Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.50350 * 2 1 4 4 H 1.08003 * 119.99792 * 244.56946 * 3 2 1 5 5 C 1.37880 * 120.00347 * 64.57190 * 3 2 1 6 6 N 1.31510 * 119.99967 * 151.23930 * 5 3 2 7 7 Si 1.86797 * 119.99467 * 331.23908 * 5 3 2 8 8 H 1.48499 * 109.46961 * 180.02562 * 7 5 3 9 9 H 1.48495 * 109.47578 * 59.99841 * 7 5 3 10 10 H 1.48499 * 109.47392 * 299.99510 * 7 5 3 11 11 C 1.53114 * 109.50559 * 239.91920 * 2 1 3 12 12 C 1.53128 * 109.15841 * 297.63439 * 11 2 1 13 13 C 1.53029 * 109.31132 * 302.40388 * 12 11 2 14 14 N 1.46855 * 109.52452 * 59.15912 * 13 12 11 15 15 C 1.46845 * 111.19530 * 298.26019 * 14 13 12 16 16 H 1.09001 * 109.46856 * 53.04495 * 1 2 3 17 17 H 1.08999 * 109.47288 * 173.04483 * 1 2 3 18 18 H 1.09002 * 109.47024 * 293.04431 * 1 2 3 19 19 H 0.96996 * 120.00084 * 354.91727 * 6 5 3 20 20 H 1.08995 * 109.52373 * 57.57536 * 11 2 1 21 21 H 1.08997 * 109.52836 * 177.77290 * 11 2 1 22 22 H 1.09003 * 109.50337 * 182.43837 * 12 11 2 23 23 H 1.09000 * 109.50073 * 62.36749 * 12 11 2 24 24 H 1.08998 * 109.46577 * 299.14146 * 13 12 11 25 25 H 1.09003 * 109.45792 * 179.16413 * 13 12 11 26 26 H 1.00899 * 110.99891 * 62.35309 * 14 13 12 27 27 H 1.09008 * 109.46048 * 301.72140 * 15 14 13 28 28 H 1.08995 * 109.46582 * 181.75798 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 1 2.5920 1.7954 -0.8447 5 6 1.7801 2.2416 1.0784 6 7 2.6166 3.2114 1.3770 7 14 0.2489 1.9764 2.1150 8 1 0.2086 2.9839 3.2051 9 1 0.2783 0.6125 2.7016 10 1 -0.9578 2.1224 1.2620 11 6 2.0412 -0.7234 -1.2489 12 6 1.5766 -2.1820 -1.2103 13 6 2.0862 -2.8417 0.0730 14 7 1.5683 -2.1133 1.2383 15 6 2.0409 -0.7230 1.2484 16 1 -0.3633 0.6178 -0.8212 17 1 -0.3634 -1.0201 -0.1244 18 1 -0.3633 0.4023 0.9457 19 1 3.4477 3.3036 0.8854 20 1 1.6437 -0.2373 -2.1398 21 1 3.1305 -0.6892 -1.2695 22 1 1.9738 -2.7134 -2.0752 23 1 0.4874 -2.2175 -1.2301 24 1 3.1758 -2.8187 0.0853 25 1 1.7443 -3.8760 0.1101 26 1 0.5606 -2.1529 1.2709 27 1 3.1308 -0.7099 1.2551 28 1 1.6663 -0.2185 2.1390 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323233.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -3.892252 kcal Electronic energy + Delta-G solvation = -10498.613443 eV Core-core repulsion = 8742.170504 eV Total energy + Delta-G solvation = -1756.442938 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.63503 -33.40542 -31.27884 -30.56194 -26.13912 -24.43383 -22.75500 -21.18959 -18.40135 -17.00774 -15.52621 -14.36871 -14.00101 -13.86011 -13.18616 -13.01675 -12.06329 -11.81294 -11.66529 -11.17811 -10.93153 -10.61148 -10.24488 -10.21880 -9.84417 -9.64351 -9.15494 -8.81601 -8.09233 -7.52842 -6.47222 -4.03035 3.37072 3.43487 3.65301 4.49912 5.04943 5.16744 5.42656 5.64908 5.73062 6.06061 6.14100 6.19219 6.26516 6.33932 6.43789 6.66344 6.69397 6.81760 6.83815 7.01611 7.33247 7.43924 7.71380 8.04916 8.30385 8.38476 8.90722 9.59557 10.87454 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.061365 B = 0.020454 C = 0.018885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.173942 B = 1368.608241 C = 1482.273399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.015 3.985 3 C -0.605 4.605 4 H 0.056 0.944 5 C 0.041 3.959 6 N -0.891 5.891 7 Si 1.048 2.952 8 H -0.299 1.299 9 H -0.275 1.275 10 H -0.290 1.290 11 C -0.093 4.093 12 C -0.161 4.161 13 C 0.061 3.939 14 N -0.696 5.696 15 C 0.057 3.943 16 H 0.050 0.950 17 H 0.030 0.970 18 H 0.038 0.962 19 H 0.270 0.730 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.331 0.669 27 H 0.062 0.938 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -8.924 -1.963 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 C -0.643 4.643 4 H 0.074 0.926 5 C -0.166 4.166 6 N -0.523 5.523 7 Si 0.881 3.119 8 H -0.227 1.227 9 H -0.203 1.203 10 H -0.218 1.218 11 C -0.130 4.130 12 C -0.200 4.200 13 C -0.069 4.069 14 N -0.324 5.324 15 C -0.071 4.071 16 H 0.069 0.931 17 H 0.049 0.951 18 H 0.057 0.943 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.700 -8.517 -0.257 9.289 hybrid contribution 0.278 -0.144 -2.185 2.208 sum -3.422 -8.660 -2.442 9.626 Atomic orbital electron populations 1.22391 0.99547 0.98475 1.00387 1.19001 0.91186 0.96471 0.92066 1.21730 1.40148 0.96130 1.06245 0.92627 1.25689 1.01111 0.93737 0.96099 1.70841 1.09159 1.34534 1.37769 0.84254 0.76586 0.75183 0.75915 1.22698 1.20286 1.21756 1.21447 0.99781 0.92738 0.99071 1.22369 1.00745 0.98303 0.98619 1.21905 0.99993 0.96377 0.88606 1.60835 1.14665 1.16328 1.40563 1.22600 0.99948 0.85341 0.99253 0.93066 0.95141 0.94342 0.91973 0.93358 0.93112 0.93079 0.92389 0.91663 0.92196 0.85253 0.91934 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 6.89 37.16 0.26 -3.02 15 2 C 0.02 0.36 0.49 -155.58 -0.08 0.28 15 3 C -0.61 -16.88 8.42 -34.44 -0.29 -17.17 15 4 H 0.06 1.68 7.99 -52.48 -0.42 1.26 15 5 C 0.04 1.16 5.12 -17.82 -0.09 1.07 15 6 N -0.89 -27.18 13.70 55.43 0.76 -26.42 15 7 Si 1.05 25.71 23.43 -169.99 -3.98 21.73 15 8 H -0.30 -7.49 7.11 56.52 0.40 -7.09 15 9 H -0.28 -6.25 5.46 56.52 0.31 -5.94 15 10 H -0.29 -6.81 6.84 56.52 0.39 -6.42 15 11 C -0.09 -1.92 4.73 -26.61 -0.13 -2.05 15 12 C -0.16 -2.73 5.73 -26.65 -0.15 -2.88 15 13 C 0.06 1.03 6.55 -3.83 -0.03 1.00 15 14 N -0.70 -13.27 6.80 -113.81 -0.77 -14.04 15 15 C 0.06 1.29 5.01 -3.83 -0.02 1.27 15 16 H 0.05 1.12 8.13 -51.93 -0.42 0.70 15 17 H 0.03 0.57 5.16 -51.93 -0.27 0.30 15 18 H 0.04 0.85 2.84 -51.93 -0.15 0.70 15 19 H 0.27 8.19 8.73 -40.82 -0.36 7.84 15 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.06 0.96 6.44 -51.93 -0.33 0.62 15 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.33 5.96 7.32 -39.29 -0.29 5.67 15 27 H 0.06 1.48 8.14 -51.92 -0.42 1.06 15 28 H 0.07 1.72 4.50 -51.93 -0.23 1.49 15 LS Contribution 206.24 15.07 3.11 3.11 Total: -1.00 -28.91 206.24 -5.32 -34.24 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.91 Total: 2.89 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -0.52 Total: -21.50 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.02 Total: -40.46 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -3.98 Total: 21.73 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -28.91 -5.32 -34.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323233.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.344 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds