Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.50350 * 2 1 4 4 H 1.08003 * 119.99792 * 244.56946 * 3 2 1 5 5 C 1.37880 * 120.00347 * 64.57190 * 3 2 1 6 6 N 1.31510 * 119.99967 * 151.23930 * 5 3 2 7 7 Si 1.86797 * 119.99467 * 331.23908 * 5 3 2 8 8 H 1.48499 * 109.46961 * 180.02562 * 7 5 3 9 9 H 1.48495 * 109.47578 * 59.99841 * 7 5 3 10 10 H 1.48499 * 109.47392 * 299.99510 * 7 5 3 11 11 C 1.53114 * 109.50559 * 239.91920 * 2 1 3 12 12 C 1.53128 * 109.15841 * 297.63439 * 11 2 1 13 13 C 1.53029 * 109.31132 * 302.40388 * 12 11 2 14 14 N 1.46855 * 109.52452 * 59.15912 * 13 12 11 15 15 C 1.46845 * 111.19530 * 298.26019 * 14 13 12 16 16 H 1.09001 * 109.46856 * 53.04495 * 1 2 3 17 17 H 1.08999 * 109.47288 * 173.04483 * 1 2 3 18 18 H 1.09002 * 109.47024 * 293.04431 * 1 2 3 19 19 H 0.96996 * 120.00084 * 354.91727 * 6 5 3 20 20 H 1.08995 * 109.52373 * 57.57536 * 11 2 1 21 21 H 1.08997 * 109.52836 * 177.77290 * 11 2 1 22 22 H 1.09003 * 109.50337 * 182.43837 * 12 11 2 23 23 H 1.09000 * 109.50073 * 62.36749 * 12 11 2 24 24 H 1.08998 * 109.46577 * 299.14146 * 13 12 11 25 25 H 1.09003 * 109.45792 * 179.16413 * 13 12 11 26 26 H 1.00899 * 110.99891 * 62.35309 * 14 13 12 27 27 H 1.09008 * 109.46048 * 301.72140 * 15 14 13 28 28 H 1.08995 * 109.46582 * 181.75798 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 1 2.5920 1.7954 -0.8447 5 6 1.7801 2.2416 1.0784 6 7 2.6166 3.2114 1.3770 7 14 0.2489 1.9764 2.1150 8 1 0.2086 2.9839 3.2051 9 1 0.2783 0.6125 2.7016 10 1 -0.9578 2.1224 1.2620 11 6 2.0412 -0.7234 -1.2489 12 6 1.5766 -2.1820 -1.2103 13 6 2.0862 -2.8417 0.0730 14 7 1.5683 -2.1133 1.2383 15 6 2.0409 -0.7230 1.2484 16 1 -0.3633 0.6178 -0.8212 17 1 -0.3634 -1.0201 -0.1244 18 1 -0.3633 0.4023 0.9457 19 1 3.4477 3.3036 0.8854 20 1 1.6437 -0.2373 -2.1398 21 1 3.1305 -0.6892 -1.2695 22 1 1.9738 -2.7134 -2.0752 23 1 0.4874 -2.2175 -1.2301 24 1 3.1758 -2.8187 0.0853 25 1 1.7443 -3.8760 0.1101 26 1 0.5606 -2.1529 1.2709 27 1 3.1308 -0.7099 1.2551 28 1 1.6663 -0.2185 2.1390 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323233.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -25.703258 kcal Electronic energy + Delta-G solvation = -10499.559239 eV Core-core repulsion = 8742.170504 eV Total energy + Delta-G solvation = -1757.388735 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.29589 -35.34510 -33.13446 -32.18450 -27.84090 -26.43514 -24.41618 -22.81621 -20.24039 -19.03485 -17.17898 -16.06055 -15.68868 -15.40892 -15.13281 -14.75996 -13.82122 -13.52945 -13.37263 -12.91968 -12.60857 -12.30335 -12.07851 -11.89691 -11.54192 -11.46342 -11.05608 -10.62321 -10.28222 -9.12323 -8.74635 -6.30814 1.41102 1.48208 1.71250 2.46403 2.96711 3.55832 3.99836 4.12635 4.24649 4.44693 4.56511 4.59432 4.69934 4.81464 4.89780 5.03537 5.10002 5.12748 5.21997 5.32613 5.57621 5.73165 5.98362 6.02481 6.36151 6.55249 6.67216 7.40034 8.57793 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.061365 B = 0.020454 C = 0.018885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.173942 B = 1368.608241 C = 1482.273399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.007 3.993 3 C -0.610 4.610 4 H 0.012 0.988 5 C -0.008 4.008 6 N -0.927 5.927 7 Si 1.086 2.914 8 H -0.309 1.309 9 H -0.241 1.241 10 H -0.269 1.269 11 C -0.094 4.094 12 C -0.150 4.150 13 C 0.059 3.941 14 N -0.691 5.691 15 C 0.068 3.932 16 H 0.043 0.957 17 H 0.068 0.932 18 H 0.036 0.964 19 H 0.255 0.745 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.342 0.658 27 H 0.038 0.962 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -11.560 -1.859 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.005 3.995 3 C -0.648 4.648 4 H 0.030 0.970 5 C -0.208 4.208 6 N -0.561 5.561 7 Si 0.912 3.088 8 H -0.237 1.237 9 H -0.167 1.167 10 H -0.195 1.195 11 C -0.132 4.132 12 C -0.189 4.189 13 C -0.070 4.070 14 N -0.320 5.320 15 C -0.062 4.062 16 H 0.063 0.937 17 H 0.086 0.914 18 H 0.055 0.945 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.160 0.840 27 H 0.057 0.943 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.651 -11.187 -0.179 12.535 hybrid contribution 0.988 0.679 -2.320 2.611 sum -4.663 -10.508 -2.499 11.765 Atomic orbital electron populations 1.22293 0.97438 1.00764 1.00066 1.19035 0.92872 0.93707 0.93910 1.21992 1.39155 0.99057 1.04582 0.96969 1.27045 1.03039 0.93087 0.97650 1.70965 1.09535 1.36590 1.38994 0.83797 0.73672 0.76611 0.74692 1.23748 1.16704 1.19513 1.21403 0.98581 0.95699 0.97475 1.22291 1.01585 0.95090 0.99943 1.22050 0.99772 0.97864 0.87355 1.60761 1.15531 1.13649 1.42072 1.22257 0.98486 0.87508 0.97940 0.93746 0.91364 0.94514 0.93624 0.94118 0.95072 0.90445 0.90928 0.92392 0.88383 0.83951 0.94291 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 6.89 71.98 0.50 -5.47 15 2 C 0.01 0.34 0.49 -52.88 -0.03 0.31 15 3 C -0.61 -34.92 8.42 25.60 0.22 -34.71 15 4 H 0.01 0.77 7.99 -2.91 -0.02 0.75 15 5 C -0.01 -0.47 5.12 84.66 0.43 -0.04 15 6 N -0.93 -58.65 13.70 21.45 0.29 -58.36 15 7 Si 1.09 51.04 23.43 68.60 1.61 52.65 15 8 H -0.31 -14.97 7.11 99.48 0.71 -14.26 15 9 H -0.24 -10.03 5.46 99.48 0.54 -9.48 15 10 H -0.27 -11.67 6.84 99.48 0.68 -10.99 15 11 C -0.09 -3.76 4.73 30.68 0.15 -3.62 15 12 C -0.15 -4.45 5.73 30.65 0.18 -4.28 15 13 C 0.06 1.72 6.55 86.32 0.57 2.28 15 14 N -0.69 -23.73 6.80 -514.00 -3.50 -27.22 15 15 C 0.07 2.94 5.01 86.33 0.43 3.37 15 16 H 0.04 1.82 8.13 -2.39 -0.02 1.80 15 17 H 0.07 2.21 5.16 -2.39 -0.01 2.19 15 18 H 0.04 1.48 2.84 -2.39 -0.01 1.48 15 19 H 0.25 16.35 8.73 -92.71 -0.81 15.54 15 20 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.07 1.98 6.44 -2.39 -0.02 1.97 15 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.34 10.57 7.32 -89.69 -0.66 9.91 15 27 H 0.04 1.84 8.14 -2.38 -0.02 1.82 15 28 H 0.06 2.67 4.50 -2.39 -0.01 2.66 15 Total: -1.00 -63.96 206.24 1.10 -62.85 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.26 Total: 12.22 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 2.44 Total: -42.14 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.20 Total: -85.58 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.61 Total: 52.65 kcal Total: -63.96 1.10 -62.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323233.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.151 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds