Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56162 * 29.31348 * 4 3 2 6 6 C 1.53006 * 117.50330 * 243.62490 * 4 3 2 7 7 C 1.52999 * 117.49930 * 175.00259 * 4 3 2 8 8 H 1.09000 * 117.51645 * 214.97334 * 7 4 3 9 9 N 1.46496 * 117.50078 * 359.97438 * 7 4 3 10 10 C 1.36934 * 120.00548 * 205.01380 * 9 7 4 11 11 H 1.08004 * 119.99288 * 0.02562 * 10 9 7 12 12 C 1.38805 * 120.00389 * 180.02562 * 10 9 7 13 13 N 1.31624 * 120.00257 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00277 * 14 12 10 16 16 H 1.48501 * 109.47062 * 30.00228 * 14 12 10 17 17 H 1.48499 * 109.46981 * 150.00382 * 14 12 10 18 18 H 1.09000 * 109.47510 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47085 * 300.00042 * 1 2 3 20 20 H 1.09000 * 109.47314 * 59.99962 * 1 2 3 21 21 H 1.09000 * 109.47085 * 239.99958 * 2 1 3 22 22 H 1.08997 * 109.46759 * 120.00530 * 2 1 3 23 23 H 1.09007 * 109.47309 * 60.00392 * 3 2 1 24 24 H 1.08994 * 109.47458 * 300.00305 * 3 2 1 25 25 H 1.08994 * 117.50036 * 145.01492 * 6 4 3 26 26 H 1.09001 * 117.51366 * 359.97438 * 6 4 3 27 27 H 0.96999 * 119.99694 * 25.01904 * 9 7 4 28 28 H 0.97001 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0455 1.2167 7 6 4.2765 2.7944 -0.1175 8 1 5.2118 2.8267 -0.6761 9 7 3.4362 3.9898 -0.2231 10 6 3.9242 5.1188 -0.8252 11 1 4.9284 5.1277 -1.2225 12 6 3.1282 6.2516 -0.9248 13 7 3.5971 7.3366 -1.5040 14 14 1.3910 6.2358 -0.2381 15 1 0.4467 5.7829 -1.2909 16 1 1.3246 5.3074 0.9190 17 1 1.0209 7.6044 0.2033 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8932 -0.5139 0.8899 23 1 1.6767 1.9563 0.8901 24 1 1.6766 1.9563 -0.8899 25 1 5.2109 1.5848 1.5357 26 1 3.6507 2.4428 2.0163 27 1 2.5342 3.9816 0.1335 28 1 3.0407 8.1280 -1.5739 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300380237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = 16.943123 kcal Electronic energy + Delta-G solvation = -9649.365094 eV Core-core repulsion = 7893.825645 eV Total energy + Delta-G solvation = -1755.539449 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.70890 -34.14929 -32.79037 -30.32387 -26.96024 -23.55086 -21.57937 -20.88562 -19.27183 -17.68857 -15.30308 -14.80629 -14.32186 -13.97105 -13.20198 -12.65727 -12.33331 -12.16655 -11.65051 -11.31301 -11.13337 -10.93162 -10.60914 -10.55920 -10.32633 -10.16848 -9.66589 -9.17349 -8.72960 -7.16580 -5.83381 -3.17962 3.34050 3.37262 3.41691 4.53551 4.61583 5.00739 5.20922 5.23818 5.36427 5.47932 5.70145 5.79766 5.85174 5.92678 6.02011 6.09874 6.21754 6.29327 6.39687 6.52921 6.59306 6.78563 6.86241 7.94273 8.36937 9.13825 9.86136 10.05561 11.34409 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.047241 B = 0.013983 C = 0.011524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.564405 B = 2001.914437 C = 2429.213501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.195 4.195 5 H 0.094 0.906 6 C -0.229 4.229 7 C 0.154 3.846 8 H 0.108 0.892 9 N -0.711 5.711 10 C -0.251 4.251 11 H 0.094 0.906 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.881 3.119 15 H -0.281 1.281 16 H -0.277 1.277 17 H -0.288 1.288 18 H 0.049 0.951 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.365 0.635 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -12.451 3.605 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.123 4.123 4 C -0.216 4.216 5 H 0.112 0.888 6 C -0.270 4.270 7 C 0.041 3.959 8 H 0.126 0.874 9 N -0.347 5.347 10 C -0.381 4.381 11 H 0.112 0.888 12 C -0.188 4.188 13 N -0.576 5.576 14 Si 0.711 3.289 15 H -0.208 1.208 16 H -0.203 1.203 17 H -0.214 1.214 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.198 0.802 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.778 -12.179 3.450 13.210 hybrid contribution -1.268 0.031 0.601 1.404 sum -5.046 -12.148 4.052 13.764 Atomic orbital electron populations 1.21800 0.96482 1.00984 1.01849 1.21498 0.95155 0.97441 1.01494 1.21030 0.93596 0.95847 1.01813 1.22844 0.94563 1.00088 1.04152 0.88787 1.23646 1.01767 1.07912 0.93682 1.20951 0.95254 0.83816 0.95870 0.87437 1.42328 1.13710 1.09979 1.68719 1.19136 1.00249 0.88525 1.30160 0.88810 1.24670 0.97963 0.95793 1.00356 1.69697 1.36743 1.02891 1.48255 0.86600 0.86151 0.77058 0.79120 1.20771 1.20298 1.21423 0.93206 0.92947 0.92746 0.92299 0.92392 0.92633 0.91615 0.90022 0.89951 0.80151 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 15 2 C -0.12 -1.55 5.89 -26.73 -0.16 -1.71 15 3 C -0.09 -1.39 4.41 -26.73 -0.12 -1.51 15 4 C -0.20 -3.30 5.74 -90.62 -0.52 -3.82 15 5 H 0.09 1.43 8.08 -51.93 -0.42 1.01 15 6 C -0.23 -3.99 10.10 -26.73 -0.27 -4.26 15 7 C 0.15 3.14 6.59 -67.93 -0.45 2.69 15 8 H 0.11 2.14 8.12 -51.93 -0.42 1.71 15 9 N -0.71 -17.40 5.19 -53.43 -0.28 -17.68 15 10 C -0.25 -7.18 10.46 -15.06 -0.16 -7.34 15 11 H 0.09 2.83 8.05 -52.48 -0.42 2.41 15 12 C 0.01 0.25 5.50 -17.43 -0.10 0.15 15 13 N -0.93 -29.19 13.97 55.49 0.78 -28.42 15 14 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 15 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 16 H -0.28 -6.65 6.52 56.52 0.37 -6.28 15 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 18 H 0.05 0.51 8.14 -51.93 -0.42 0.08 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.05 0.94 7.79 -51.92 -0.40 0.53 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.08 1.49 8.03 -51.93 -0.42 1.07 15 27 H 0.36 8.78 4.89 -40.82 -0.20 8.58 15 28 H 0.26 7.78 8.31 -40.82 -0.34 7.45 15 LS Contribution 236.50 15.07 3.56 3.56 Total: -1.00 -30.13 236.50 -6.46 -36.59 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.41 Total: 5.68 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.40 Total: -17.25 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.50 Total: -46.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.13 -6.46 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300380237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.533 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds