Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56162 * 29.31348 * 4 3 2 6 6 C 1.53006 * 117.50330 * 243.62490 * 4 3 2 7 7 C 1.52999 * 117.49930 * 175.00259 * 4 3 2 8 8 H 1.09000 * 117.51645 * 214.97334 * 7 4 3 9 9 N 1.46496 * 117.50078 * 359.97438 * 7 4 3 10 10 C 1.36934 * 120.00548 * 205.01380 * 9 7 4 11 11 H 1.08004 * 119.99288 * 0.02562 * 10 9 7 12 12 C 1.38805 * 120.00389 * 180.02562 * 10 9 7 13 13 N 1.31624 * 120.00257 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00277 * 14 12 10 16 16 H 1.48501 * 109.47062 * 30.00228 * 14 12 10 17 17 H 1.48499 * 109.46981 * 150.00382 * 14 12 10 18 18 H 1.09000 * 109.47510 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47085 * 300.00042 * 1 2 3 20 20 H 1.09000 * 109.47314 * 59.99962 * 1 2 3 21 21 H 1.09000 * 109.47085 * 239.99958 * 2 1 3 22 22 H 1.08997 * 109.46759 * 120.00530 * 2 1 3 23 23 H 1.09007 * 109.47309 * 60.00392 * 3 2 1 24 24 H 1.08994 * 109.47458 * 300.00305 * 3 2 1 25 25 H 1.08994 * 117.50036 * 145.01492 * 6 4 3 26 26 H 1.09001 * 117.51366 * 359.97438 * 6 4 3 27 27 H 0.96999 * 119.99694 * 25.01904 * 9 7 4 28 28 H 0.97001 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0455 1.2167 7 6 4.2765 2.7944 -0.1175 8 1 5.2118 2.8267 -0.6761 9 7 3.4362 3.9898 -0.2231 10 6 3.9242 5.1188 -0.8252 11 1 4.9284 5.1277 -1.2225 12 6 3.1282 6.2516 -0.9248 13 7 3.5971 7.3366 -1.5040 14 14 1.3910 6.2358 -0.2381 15 1 0.4467 5.7829 -1.2909 16 1 1.3246 5.3074 0.9190 17 1 1.0209 7.6044 0.2033 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8932 -0.5139 0.8899 23 1 1.6767 1.9563 0.8901 24 1 1.6766 1.9563 -0.8899 25 1 5.2109 1.5848 1.5357 26 1 3.6507 2.4428 2.0163 27 1 2.5342 3.9816 0.1335 28 1 3.0407 8.1280 -1.5739 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300380237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -1.743898 kcal Electronic energy + Delta-G solvation = -9650.175424 eV Core-core repulsion = 7893.825645 eV Total energy + Delta-G solvation = -1756.349779 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.21907 -35.70079 -34.46113 -32.34599 -28.14667 -25.64014 -22.69958 -22.41072 -20.77590 -19.77546 -16.97027 -16.11496 -16.08928 -15.57677 -14.70191 -14.32818 -13.83681 -13.50882 -13.18182 -12.97367 -12.83730 -12.41326 -12.15602 -11.93411 -11.79661 -11.70368 -11.59985 -10.77278 -10.60168 -9.11032 -8.08302 -5.40468 1.32947 1.36094 1.43051 2.42584 3.04650 3.36483 3.47440 3.84506 4.17268 4.21299 4.36771 4.44695 4.53415 4.69241 4.92214 4.96930 5.03591 5.10241 5.16349 5.24490 5.40914 5.44716 5.56111 5.72091 6.17404 7.00616 7.77309 7.96115 9.12908 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.047241 B = 0.013983 C = 0.011524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.564405 B = 2001.914437 C = 2429.213501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.089 4.089 4 C -0.168 4.168 5 H 0.119 0.881 6 C -0.208 4.208 7 C 0.107 3.893 8 H 0.102 0.898 9 N -0.719 5.719 10 C -0.240 4.240 11 H 0.062 0.938 12 C -0.059 4.059 13 N -0.979 5.979 14 Si 0.950 3.050 15 H -0.274 1.274 16 H -0.257 1.257 17 H -0.290 1.290 18 H 0.069 0.931 19 H 0.050 0.950 20 H 0.047 0.953 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.367 0.633 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -14.753 4.734 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.127 4.127 4 C -0.188 4.188 5 H 0.137 0.863 6 C -0.248 4.248 7 C -0.003 4.003 8 H 0.120 0.880 9 N -0.358 5.358 10 C -0.371 4.371 11 H 0.080 0.920 12 C -0.251 4.251 13 N -0.629 5.629 14 Si 0.777 3.223 15 H -0.200 1.200 16 H -0.182 1.182 17 H -0.216 1.216 18 H 0.088 0.912 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.201 0.799 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.901 -14.558 4.603 16.035 hybrid contribution -0.800 0.656 0.237 1.061 sum -5.700 -13.901 4.840 15.785 Atomic orbital electron populations 1.21806 0.95635 1.02215 1.01526 1.21452 0.95920 0.95089 1.02505 1.21082 0.93043 0.97979 1.00580 1.22925 0.95081 0.98017 1.02826 0.86280 1.23633 1.02841 1.05904 0.92434 1.21222 0.95785 0.84330 0.99003 0.87987 1.42209 1.14311 1.10121 1.69177 1.19113 0.98911 0.90043 1.28989 0.92006 1.25468 1.02592 0.95440 1.01591 1.69868 1.38596 1.03781 1.50647 0.85490 0.80595 0.77192 0.79064 1.20025 1.18204 1.21620 0.91227 0.93067 0.93351 0.91408 0.91201 0.93373 0.93437 0.87459 0.90355 0.79878 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.48 15 2 C -0.11 -2.54 5.89 30.59 0.18 -2.36 15 3 C -0.09 -2.67 4.41 30.59 0.13 -2.53 15 4 C -0.17 -5.17 5.74 -10.79 -0.06 -5.23 15 5 H 0.12 3.12 8.08 -2.38 -0.02 3.10 15 6 C -0.21 -6.63 10.10 30.60 0.31 -6.32 15 7 C 0.11 4.23 6.59 44.99 0.30 4.53 15 8 H 0.10 4.05 8.12 -2.39 -0.02 4.04 15 9 N -0.72 -34.95 5.19 -322.95 -1.68 -36.63 15 10 C -0.24 -14.01 10.46 84.03 0.88 -13.13 15 11 H 0.06 3.91 8.05 -2.91 -0.02 3.88 15 12 C -0.06 -3.54 5.50 84.86 0.47 -3.07 15 13 N -0.98 -63.27 13.97 21.65 0.30 -62.96 15 14 Si 0.95 46.12 27.74 68.60 1.90 48.03 15 15 H -0.27 -12.91 7.11 99.48 0.71 -12.21 15 16 H -0.26 -11.48 6.52 99.48 0.65 -10.83 15 17 H -0.29 -14.06 7.11 99.48 0.71 -13.36 15 18 H 0.07 1.17 8.14 -2.39 -0.02 1.15 15 19 H 0.05 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.05 1.50 7.79 -2.38 -0.02 1.48 15 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 25 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 26 H 0.08 2.61 8.03 -2.39 -0.02 2.59 15 27 H 0.37 17.21 4.89 -92.71 -0.45 16.75 15 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 15 Total: -1.00 -65.10 236.50 4.05 -61.05 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.60 Total: 21.12 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 2.92 Total: -30.60 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -1.37 Total: -99.59 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.03 kcal Total: -65.10 4.05 -61.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300380237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.309 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds