Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 5 5 C 1.53775 * 87.07946 * 220.01618 * 4 2 1 6 6 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 7 7 H 1.09001 * 113.62003 * 254.53090 * 6 2 1 8 8 N 1.46506 * 113.61480 * 25.43111 * 6 2 1 9 9 C 1.36934 * 119.99972 * 205.00235 * 8 6 2 10 10 H 1.08001 * 120.00163 * 359.97438 * 9 8 6 11 11 C 1.38816 * 119.99563 * 179.97438 * 9 8 6 12 12 N 1.31619 * 120.00169 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99872 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47195 * 90.00149 * 13 11 9 15 15 H 1.48501 * 109.47383 * 210.00083 * 13 11 9 16 16 H 1.48509 * 109.47214 * 330.00173 * 13 11 9 17 17 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 18 18 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 19 19 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 20 20 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 21 21 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 22 22 H 1.09002 * 109.47267 * 309.66699 * 3 2 1 23 23 H 1.08995 * 113.61021 * 334.56688 * 4 2 1 24 24 H 1.08997 * 113.61084 * 105.46520 * 4 2 1 25 25 H 1.08998 * 113.61939 * 270.88180 * 5 4 2 26 26 H 1.08999 * 113.61214 * 139.97804 * 5 4 2 27 27 H 0.96999 * 119.99357 * 25.00215 * 8 6 2 28 28 H 0.97001 * 119.99638 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9301 -1.0585 5 6 3.1923 -1.3135 0.0012 6 6 2.1461 -0.9280 1.0601 7 1 2.5651 -0.3971 1.9149 8 7 1.2704 -2.0358 1.4505 9 6 1.4148 -2.6223 2.6794 10 1 2.1744 -2.2685 3.3608 11 6 0.5847 -3.6717 3.0494 12 7 -0.3407 -4.1031 2.2189 13 14 0.7821 -4.4723 4.7256 14 1 -0.0775 -3.7715 5.7132 15 1 0.3792 -5.8992 4.6431 16 1 2.2015 -4.3826 5.1530 17 1 -0.3633 0.3312 0.9728 18 1 -0.3633 -1.0081 -0.1996 19 1 -0.3634 0.6769 -0.7733 20 1 1.9361 1.8834 0.9636 21 1 3.1988 1.3514 -0.1726 22 1 1.6607 1.9996 -0.7911 23 1 1.4945 -1.7548 -1.3473 24 1 2.5649 -0.4006 -1.9142 25 1 4.0711 -0.6686 0.0006 26 1 3.4443 -2.3740 0.0022 27 1 0.5885 -2.3538 0.8384 28 1 -0.9204 -4.8366 2.4773 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306176960.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = 0.340314 kcal Electronic energy + Delta-G solvation = -10033.399099 eV Core-core repulsion = 8277.139698 eV Total energy + Delta-G solvation = -1756.259401 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.57043 -35.46848 -32.31679 -31.09778 -28.18348 -26.54560 -24.54487 -22.94801 -19.42813 -18.70956 -16.62654 -16.04814 -15.82852 -15.17955 -14.68630 -14.21298 -13.96299 -13.15664 -12.99048 -12.87712 -12.80549 -12.28365 -12.24690 -12.14183 -12.01784 -11.30601 -11.15698 -10.69226 -10.64863 -8.97573 -7.95608 -5.23503 1.46151 1.48216 1.56705 2.55187 3.36305 3.67798 3.83824 3.95481 4.29610 4.30176 4.52558 4.75087 4.82840 4.91115 4.97568 5.04742 5.09413 5.18879 5.25281 5.33122 5.41047 5.50413 5.66178 5.82246 6.28188 7.32745 8.11797 8.34712 9.28073 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.074941 B = 0.012976 C = 0.012576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.539120 B = 2157.285615 C = 2225.910138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.167 4.167 6 C 0.150 3.850 7 H 0.052 0.948 8 N -0.719 5.719 9 C -0.243 4.243 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.286 1.286 15 H -0.295 1.295 16 H -0.270 1.270 17 H 0.038 0.962 18 H 0.031 0.969 19 H 0.069 0.931 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.375 0.625 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 8.965 -4.584 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.102 4.102 3 C -0.172 4.172 4 C -0.155 4.155 5 C -0.208 4.208 6 C 0.040 3.960 7 H 0.071 0.929 8 N -0.357 5.357 9 C -0.375 4.375 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.195 1.195 17 H 0.057 0.943 18 H 0.050 0.950 19 H 0.088 0.912 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.208 0.792 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.973 8.917 -4.390 11.113 hybrid contribution -0.448 -1.033 0.686 1.318 sum 4.525 7.884 -3.704 9.816 Atomic orbital electron populations 1.21482 0.95119 1.00406 1.00721 1.22374 0.95057 0.96046 0.96740 1.21489 1.00906 0.92692 1.02114 1.22792 0.97812 0.98358 0.96531 1.23621 0.98145 1.00134 0.98885 1.21576 0.91516 0.88872 0.94040 0.92942 1.42327 1.39371 1.37523 1.16491 1.19696 1.13228 1.11137 0.93423 0.90730 1.25583 0.98746 1.00460 1.02173 1.69827 1.24014 1.30724 1.37590 0.85109 0.77897 0.77075 0.79498 1.21333 1.22176 1.19455 0.94313 0.94972 0.91250 0.92667 0.91402 0.90965 0.92710 0.89769 0.88588 0.94226 0.79165 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.58 71.98 0.62 -3.61 15 2 C -0.10 -3.34 1.35 -51.65 -0.07 -3.41 15 3 C -0.11 -2.88 9.07 71.98 0.65 -2.22 15 4 C -0.12 -3.83 7.08 31.12 0.22 -3.61 15 5 C -0.17 -5.97 7.53 31.12 0.23 -5.73 15 6 C 0.15 6.22 4.02 45.51 0.18 6.40 15 7 H 0.05 2.19 8.06 -2.39 -0.02 2.17 15 8 N -0.72 -37.69 4.82 -320.45 -1.54 -39.24 15 9 C -0.24 -13.93 9.97 84.03 0.84 -13.10 15 10 H 0.07 4.11 7.83 -2.91 -0.02 4.09 15 11 C -0.08 -4.56 5.50 84.86 0.47 -4.10 15 12 N -0.97 -60.71 13.06 21.65 0.28 -60.43 15 13 Si 0.98 47.05 29.55 68.60 2.03 49.07 15 14 H -0.29 -13.52 7.11 99.48 0.71 -12.82 15 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 15 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 17 H 0.04 1.45 8.14 -2.39 -0.02 1.44 15 18 H 0.03 1.29 6.63 -2.39 -0.02 1.27 15 19 H 0.07 1.99 8.14 -2.38 -0.02 1.97 15 20 H 0.05 1.38 8.14 -2.39 -0.02 1.37 15 21 H 0.07 1.51 7.34 -2.38 -0.02 1.49 15 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.05 2.01 7.96 -2.39 -0.02 1.99 15 24 H 0.08 2.21 8.10 -2.39 -0.02 2.19 15 25 H 0.10 2.81 7.64 -2.39 -0.02 2.79 15 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 27 H 0.38 21.03 6.37 -92.71 -0.59 20.44 15 28 H 0.25 15.18 8.31 -92.71 -0.77 14.41 15 Total: -1.00 -63.72 230.80 4.44 -59.28 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.53 Total: 20.69 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 3.14 Total: -29.38 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -1.26 Total: -99.66 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -63.72 4.44 -59.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306176960.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.622 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds