Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47261 * 2 1 4 4 H 1.09002 * 112.78601 * 65.81320 * 3 2 1 5 5 C 1.53517 * 113.47513 * 196.61804 * 3 2 1 6 6 C 1.53518 * 83.57282 * 140.78960 * 5 3 2 7 7 N 1.47474 * 87.93469 * 333.98004 * 6 5 3 8 8 C 1.46893 * 111.00355 * 138.70179 * 7 6 5 9 9 C 1.50708 * 109.47161 * 91.52417 * 8 7 6 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 H 1.09004 * 109.46962 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.46801 * 299.99950 * 1 2 3 19 19 H 1.08993 * 109.47051 * 59.99787 * 1 2 3 20 20 H 1.09004 * 109.47037 * 239.99662 * 2 1 3 21 21 H 1.09007 * 109.47210 * 120.00253 * 2 1 3 22 22 H 1.08996 * 114.16829 * 27.14911 * 5 3 2 23 23 H 1.08994 * 114.17405 * 254.43867 * 5 3 2 24 24 H 1.08998 * 113.47744 * 219.21057 * 6 5 3 25 25 H 1.09000 * 113.52587 * 88.75448 * 6 5 3 26 26 H 1.08994 * 109.47623 * 331.52607 * 8 7 6 27 27 H 1.09000 * 109.47422 * 211.52577 * 8 7 6 28 28 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7926 1.9777 0.9167 5 6 3.5161 1.5692 -0.4027 6 6 3.0268 2.8195 -1.1471 7 7 1.6970 2.1870 -1.2259 8 6 0.6324 3.1654 -0.9670 9 6 0.1815 3.7738 -2.2700 10 1 0.6396 3.4642 -3.1976 11 6 -0.8167 4.7249 -2.2779 12 7 -1.2106 5.2554 -3.4150 13 14 -1.6097 5.2598 -0.6734 14 1 -2.7805 4.3924 -0.3865 15 1 -2.0560 6.6716 -0.7883 16 1 -0.6232 5.1409 0.4302 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 1.8934 -0.5139 -0.8900 21 1 1.8934 -0.5139 0.8900 22 1 3.8706 0.7715 -1.0554 23 1 4.1890 1.7793 0.4285 24 1 3.4997 2.9590 -2.1192 25 1 3.0425 3.7229 -0.5373 26 1 1.0111 3.9497 -0.3118 27 1 -0.2104 2.6672 -0.4878 28 1 -1.9125 5.9248 -3.4205 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306284020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 24.619877 kcal Electronic energy + Delta-G solvation = -9970.138719 eV Core-core repulsion = 8214.932160 eV Total energy + Delta-G solvation = -1755.206560 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.48001 -32.96908 -32.29854 -30.05548 -25.71253 -25.17950 -21.60716 -21.02430 -19.06515 -16.64121 -15.48109 -14.84910 -14.30008 -13.72961 -13.16165 -12.51398 -12.44754 -12.12608 -11.89344 -11.27043 -11.09051 -10.93727 -10.53600 -10.24063 -10.14158 -9.67965 -9.61490 -9.25234 -8.54198 -7.88079 -6.03017 -3.99699 3.28174 3.35516 3.36991 4.42939 4.76762 4.96406 5.25238 5.28160 5.54807 5.69138 5.86141 5.88409 6.09053 6.11859 6.27720 6.31447 6.33415 6.46485 6.60171 6.67080 6.82456 6.86861 7.40271 7.76615 7.95577 8.67665 9.07926 9.58861 11.10572 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.052817 B = 0.015181 C = 0.013634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.001093 B = 1843.945854 C = 2053.135739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C 0.016 3.984 4 H 0.064 0.936 5 C -0.147 4.147 6 C 0.008 3.992 7 N -0.450 5.450 8 C 0.127 3.873 9 C -0.504 4.504 10 H 0.079 0.921 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.269 1.269 17 H 0.045 0.955 18 H 0.044 0.956 19 H 0.071 0.929 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.060 0.940 26 H -0.004 1.004 27 H 0.025 0.975 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -6.828 8.258 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.094 4.094 4 H 0.082 0.918 5 C -0.184 4.184 6 C -0.122 4.122 7 N -0.172 5.172 8 C -0.001 4.001 9 C -0.542 4.542 10 H 0.097 0.903 11 C -0.135 4.135 12 N -0.541 5.541 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.194 1.194 17 H 0.064 0.936 18 H 0.063 0.937 19 H 0.090 0.910 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.014 0.986 27 H 0.043 0.957 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.396 -7.017 7.565 11.644 hybrid contribution -0.476 1.010 1.536 1.899 sum 4.920 -6.007 9.101 11.963 Atomic orbital electron populations 1.21743 0.95920 1.00626 1.02673 1.21332 0.96194 0.95191 1.00947 1.23394 0.94695 0.96385 0.94906 0.91763 1.23249 0.95850 0.99333 1.00008 1.23577 0.92905 0.95377 1.00303 1.68865 1.02210 1.18138 1.28022 1.20739 0.91272 0.90293 0.97753 1.20984 1.19283 1.20820 0.93114 0.90269 1.24925 0.96546 0.96044 0.95950 1.69898 1.30062 1.28878 1.25242 0.86880 0.80122 0.78148 0.84731 1.20139 1.21137 1.19401 0.93626 0.93664 0.90987 0.91634 0.92786 0.89505 0.91849 0.90490 0.92162 0.98625 0.95723 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.20 37.16 0.34 -2.13 15 2 C -0.10 -1.52 5.99 -26.73 -0.16 -1.68 15 3 C 0.02 0.28 3.06 -71.43 -0.22 0.06 15 4 H 0.06 1.13 7.91 -51.93 -0.41 0.71 15 5 C -0.15 -2.23 8.01 -26.20 -0.21 -2.44 15 6 C 0.01 0.14 7.69 -7.54 -0.06 0.09 15 7 N -0.45 -9.77 5.81 -237.94 -1.38 -11.15 15 8 C 0.13 3.17 3.39 -4.98 -0.02 3.15 15 9 C -0.50 -14.86 9.93 -34.44 -0.34 -15.20 15 10 H 0.08 2.57 8.06 -52.49 -0.42 2.14 15 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 12 N -0.90 -28.26 13.96 55.43 0.77 -27.48 15 13 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 15 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 16 H -0.27 -6.52 6.54 56.52 0.37 -6.15 15 17 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 18 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.07 1.39 7.23 -51.93 -0.38 1.01 15 20 H 0.06 1.01 8.08 -51.93 -0.42 0.59 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.09 1.24 8.07 -51.93 -0.42 0.82 15 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 25 H 0.06 1.14 7.44 -51.93 -0.39 0.75 15 26 H 0.00 -0.10 6.41 -51.93 -0.33 -0.43 15 27 H 0.02 0.62 6.36 -51.93 -0.33 0.29 15 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 229.30 15.07 3.46 3.46 Total: -1.00 -30.98 229.30 -6.96 -37.94 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -4.38 Total: -3.78 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.76 Total: -16.26 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.61 Total: -38.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.98 -6.96 -37.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306284020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.559 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds