Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 112.94102 * 2 1 4 4 C 1.53942 * 113.82827 * 228.34424 * 2 1 3 5 5 N 1.47959 * 86.17865 * 221.90587 * 4 2 1 6 6 C 1.46901 * 111.00008 * 137.58143 * 5 4 2 7 7 C 1.50706 * 109.46976 * 76.48226 * 6 5 4 8 8 H 1.08004 * 119.99615 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00150 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99939 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00215 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46853 * 89.99965 * 11 9 7 13 13 H 1.48497 * 109.47213 * 209.99936 * 11 9 7 14 14 H 1.48498 * 109.46940 * 330.00264 * 11 9 7 15 15 C 1.47958 * 90.76416 * 24.68798 * 5 4 2 16 16 H 1.09001 * 113.76205 * 220.99014 * 15 5 4 17 17 C 1.53006 * 113.75667 * 89.62628 * 15 5 4 18 18 H 1.08997 * 109.47005 * 290.33118 * 1 2 3 19 19 H 1.08991 * 109.47438 * 50.33277 * 1 2 3 20 20 H 1.09005 * 109.46937 * 170.33174 * 1 2 3 21 21 H 1.08991 * 113.75930 * 336.22597 * 4 2 1 22 22 H 1.09003 * 113.75483 * 107.59118 * 4 2 1 23 23 H 1.09000 * 109.47188 * 196.48032 * 6 5 4 24 24 H 1.09000 * 109.47118 * 316.48268 * 6 5 4 25 25 H 0.97005 * 120.00196 * 179.97438 * 10 9 7 26 26 H 1.08993 * 109.47386 * 316.69782 * 17 15 5 27 27 H 1.09001 * 109.46742 * 76.69760 * 17 15 5 28 28 H 1.09000 * 109.46953 * 196.69605 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9549 1.0038 0.0000 4 6 2.1519 -0.9360 -1.0521 5 7 3.1172 -1.3177 0.0023 6 6 3.3494 -2.7682 0.0032 7 6 4.2580 -3.1322 -1.1427 8 1 4.6263 -2.3628 -1.8052 9 6 4.6198 -4.4471 -1.3449 10 7 4.1725 -5.3838 -0.5373 11 14 5.7454 -4.8984 -2.7657 12 1 7.1592 -4.8381 -2.3156 13 1 5.4315 -6.2741 -3.2283 14 1 5.5403 -3.9417 -3.8828 15 6 2.1496 -0.9350 1.0542 16 1 2.6010 -0.4097 1.8960 17 6 1.2255 -2.0753 1.4861 18 1 -0.3633 0.3570 0.9636 19 1 -0.3634 0.6559 -0.7910 20 1 -0.3633 -1.0131 -0.1726 21 1 1.4942 -1.7485 -1.3605 22 1 2.6051 -0.4114 -1.8933 23 1 3.8160 -3.0609 0.9439 24 1 2.3981 -3.2886 -0.1079 25 1 4.4267 -6.3090 -0.6797 26 1 0.8772 -2.6143 0.6051 27 1 1.7709 -2.7580 2.1376 28 1 0.3700 -1.6660 2.0234 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306640282.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = 0.967798 kcal Electronic energy + Delta-G solvation = -10012.137749 eV Core-core repulsion = 8255.905558 eV Total energy + Delta-G solvation = -1756.232191 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.19921 -35.19176 -32.65419 -30.60454 -29.26427 -25.99374 -25.01988 -22.40322 -19.04293 -18.63806 -17.15118 -16.70151 -15.90802 -15.46015 -14.70316 -14.14300 -13.60075 -13.42377 -13.31991 -12.91841 -12.86757 -12.70652 -12.34276 -12.16151 -11.91629 -11.35728 -11.02855 -10.94829 -10.63298 -9.37567 -8.23961 -6.34578 1.37552 1.39694 1.50954 2.37938 3.08048 3.31504 3.56174 3.93327 4.36436 4.39647 4.50066 4.64436 4.72749 4.87732 4.89830 4.97544 5.02056 5.06620 5.14359 5.28828 5.35155 5.54508 5.63176 5.83916 6.18003 6.52935 6.81353 7.35172 8.87371 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.080814 B = 0.012641 C = 0.011739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.391506 B = 2214.432194 C = 2384.628745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.502 5.502 6 C 0.177 3.823 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.933 5.933 11 Si 0.971 3.029 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.266 1.266 15 C 0.016 3.984 16 H 0.092 0.908 17 C -0.144 4.144 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.073 0.927 23 H -0.007 1.007 24 H -0.012 1.012 25 H 0.265 0.735 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 8.360 0.646 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 H 0.123 0.877 4 C -0.115 4.115 5 N -0.224 5.224 6 C 0.050 3.950 7 C -0.570 4.570 8 H 0.073 0.927 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.795 3.205 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.190 1.190 15 C -0.093 4.093 16 H 0.110 0.890 17 C -0.202 4.202 18 H 0.093 0.907 19 H 0.089 0.911 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.011 0.989 24 H 0.006 0.994 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.050 8.430 0.680 10.399 hybrid contribution 0.079 -1.269 -0.507 1.368 sum -5.972 7.162 0.173 9.327 Atomic orbital electron populations 1.21717 0.92877 1.01801 1.02972 1.22956 0.96710 0.98252 0.93641 0.87661 1.23750 0.93897 0.97705 0.96160 1.68546 1.32342 1.17438 1.04114 1.19814 0.94582 0.85205 0.95375 1.21477 1.29535 0.92957 1.13077 0.92714 1.25937 0.97978 0.96200 0.99540 1.70082 1.46407 1.01275 1.39574 0.85365 0.78731 0.77534 0.78881 1.19801 1.20318 1.18985 1.23522 0.92939 0.96546 0.96309 0.88954 1.21868 0.99856 0.97793 1.00725 0.90683 0.91114 0.93468 0.93291 0.90810 0.98893 0.99390 0.92596 0.94038 0.94187 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.69 71.98 0.63 -2.56 15 2 C -0.10 -2.92 4.49 -10.15 -0.05 -2.97 15 3 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 4 C 0.01 0.55 6.87 86.41 0.59 1.15 15 5 N -0.50 -23.22 6.21 -887.26 -5.51 -28.73 15 6 C 0.18 9.91 3.74 85.56 0.32 10.23 15 7 C -0.53 -31.87 9.03 25.60 0.23 -31.64 15 8 H 0.05 3.25 7.81 -2.91 -0.02 3.23 15 9 C 0.00 0.09 5.46 84.65 0.46 0.55 15 10 N -0.93 -57.65 13.29 21.44 0.28 -57.37 15 11 Si 0.97 45.64 29.54 68.60 2.03 47.66 15 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 15 C 0.02 0.58 4.85 45.02 0.22 0.80 15 16 H 0.09 3.12 8.14 -2.39 -0.02 3.10 15 17 C -0.14 -5.05 6.99 71.98 0.50 -4.54 15 18 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 19 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.05 1.20 6.92 -2.38 -0.02 1.19 15 21 H 0.05 2.06 7.11 -2.39 -0.02 2.04 15 22 H 0.07 2.83 8.14 -2.39 -0.02 2.81 15 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 15 24 H -0.01 -0.67 5.68 -2.39 -0.01 -0.69 15 25 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 26 H 0.04 1.60 5.65 -2.39 -0.01 1.59 15 27 H 0.04 1.53 7.96 -2.39 -0.02 1.51 15 28 H 0.09 2.42 7.76 -2.39 -0.02 2.41 15 Total: -1.00 -66.21 226.52 0.82 -65.39 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 1.11 Total: 2.03 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 2.91 Total: -28.99 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -5.23 Total: -86.09 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -66.21 0.82 -65.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306640282.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.355 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds