Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 113.25421 * 2 1 4 4 C 1.53513 * 114.16998 * 133.20516 * 2 1 3 5 5 N 1.47480 * 87.93170 * 139.67297 * 4 2 1 6 6 C 1.46901 * 111.00171 * 221.29782 * 5 4 2 7 7 C 1.50701 * 109.46921 * 265.96874 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.47482 * 87.83699 * 332.98885 * 5 4 2 16 16 H 1.08994 * 113.48196 * 141.77485 * 15 5 4 17 17 C 1.52999 * 113.47591 * 272.18633 * 15 5 4 18 18 H 1.09007 * 109.46728 * 192.95346 * 1 2 3 19 19 H 1.08997 * 109.47170 * 312.94939 * 1 2 3 20 20 H 1.08994 * 109.47204 * 72.95951 * 1 2 3 21 21 H 1.08999 * 113.47967 * 24.90572 * 4 2 1 22 22 H 1.08994 * 113.47798 * 254.43800 * 4 2 1 23 23 H 1.09002 * 109.47401 * 145.96902 * 6 5 4 24 24 H 1.09001 * 109.46874 * 25.96914 * 6 5 4 25 25 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47105 * 40.49435 * 17 15 5 27 27 H 1.09003 * 109.47249 * 160.49424 * 17 15 5 28 28 H 1.09003 * 109.47132 * 280.49052 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1586 -0.9588 1.0209 5 7 3.1619 -1.3059 -0.0028 6 6 3.4331 -2.7496 -0.0061 7 6 4.6265 -3.0385 0.8677 8 1 5.1325 -2.2304 1.3751 9 6 5.0716 -4.3345 1.0203 10 7 4.4551 -5.3184 0.4029 11 14 6.5504 -4.6925 2.1040 12 1 6.0950 -4.9486 3.4940 13 1 7.2638 -5.8886 1.5885 14 1 7.4680 -3.5251 2.0909 15 6 2.1586 -0.9543 -1.0251 16 1 2.5810 -0.4445 -1.8909 17 6 1.2479 -2.1213 -1.4119 18 1 -0.3633 -1.0016 0.2304 19 1 -0.3633 0.7002 0.7522 20 1 -0.3633 0.3011 -0.9825 21 1 1.5091 -1.7911 1.2921 22 1 2.5811 -0.4529 1.8889 23 1 3.6405 -3.0781 -1.0245 24 1 2.5638 -3.2834 0.3780 25 1 4.7685 -6.2302 0.5100 26 1 0.9807 -2.6853 -0.5183 27 1 0.3433 -1.7358 -1.8822 28 1 1.7708 -2.7741 -2.1108 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306640288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = 25.301412 kcal Electronic energy + Delta-G solvation = -9988.138557 eV Core-core repulsion = 8232.961551 eV Total energy + Delta-G solvation = -1755.177006 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.85464 -33.06711 -31.06236 -28.99194 -27.50575 -24.13064 -23.47220 -20.67318 -17.60777 -16.42634 -15.57113 -14.72692 -14.33560 -13.76867 -13.11043 -12.43847 -12.02825 -11.88294 -11.74328 -11.43135 -11.02100 -10.89418 -10.76873 -10.38955 -10.16536 -9.52703 -9.38016 -9.14679 -8.38174 -7.68878 -5.99211 -3.99880 3.34272 3.39855 3.45422 4.46471 4.84926 5.00594 5.29598 5.35840 5.72255 5.79461 5.83050 6.00897 6.02986 6.14597 6.25753 6.31913 6.44088 6.59464 6.64733 6.79706 6.88284 7.32522 7.75309 7.94578 8.20537 8.56315 9.07996 9.63873 11.11806 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.087884 B = 0.012158 C = 0.011365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.526589 B = 2302.367795 C = 2463.031879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 H 0.091 0.909 4 C 0.013 3.987 5 N -0.466 5.466 6 C 0.160 3.840 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.022 3.978 16 H 0.078 0.922 17 C -0.156 4.156 18 H 0.055 0.945 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.028 0.972 24 H 0.005 0.995 25 H 0.260 0.740 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 7.019 -1.018 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.109 0.891 4 C -0.117 4.117 5 N -0.188 5.188 6 C 0.034 3.966 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.148 4.148 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.088 4.088 16 H 0.096 0.904 17 C -0.214 4.214 18 H 0.074 0.926 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.927 7.092 -1.044 9.301 hybrid contribution 0.105 -0.921 0.553 1.079 sum -5.822 6.171 -0.491 8.498 Atomic orbital electron populations 1.21697 0.95348 1.01588 1.00981 1.22830 0.94643 0.98619 0.98227 0.89050 1.23732 0.94177 0.97339 0.96425 1.69041 1.26072 1.22119 1.01617 1.20214 0.96437 0.82347 0.97636 1.21170 1.12867 0.92520 1.27746 0.92016 1.25005 0.97328 0.96204 0.96234 1.69959 1.40994 0.99704 1.43452 0.86488 0.82692 0.77758 0.80439 1.20744 1.21264 1.19783 1.23217 0.93275 0.95596 0.96705 0.90429 1.22011 0.98981 0.98363 1.02034 0.92570 0.93071 0.92831 0.92054 0.91210 0.95416 0.97675 0.92998 0.92054 0.92887 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.62 37.16 0.32 -1.49 15 2 C -0.12 -2.00 4.65 -90.09 -0.42 -2.42 15 3 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 4 C 0.01 0.25 6.98 -7.54 -0.05 0.20 15 5 N -0.47 -10.72 6.32 -237.89 -1.50 -12.22 15 6 C 0.16 4.31 3.66 -4.97 -0.02 4.29 15 7 C -0.50 -14.90 9.39 -34.44 -0.32 -15.22 15 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 15 10 N -0.90 -27.40 13.29 55.43 0.74 -26.66 15 11 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 15 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 15 C 0.02 0.41 4.67 -71.43 -0.33 0.08 15 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 17 C -0.16 -2.74 7.11 37.16 0.26 -2.48 15 18 H 0.06 0.76 7.09 -51.92 -0.37 0.39 15 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.63 8.08 -51.93 -0.42 0.21 15 21 H 0.06 1.23 6.44 -51.93 -0.33 0.90 15 22 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 23 H 0.03 0.80 7.47 -51.93 -0.39 0.41 15 24 H 0.01 0.15 6.01 -51.93 -0.31 -0.16 15 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 26 H 0.06 1.17 5.64 -51.93 -0.29 0.87 15 27 H 0.05 0.77 7.50 -51.93 -0.39 0.38 15 28 H 0.06 1.13 7.65 -51.93 -0.40 0.74 15 LS Contribution 225.57 15.07 3.40 3.40 Total: -1.00 -30.65 225.57 -7.19 -37.84 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.14 Total: -4.01 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.66 Total: -15.59 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.77 Total: -38.88 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.65 -7.19 -37.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306640288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.137 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds