Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 113.25421 * 2 1 4 4 C 1.53513 * 114.16998 * 133.20516 * 2 1 3 5 5 N 1.47480 * 87.93170 * 139.67297 * 4 2 1 6 6 C 1.46901 * 111.00171 * 221.29782 * 5 4 2 7 7 C 1.50701 * 109.46921 * 265.96874 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.47482 * 87.83699 * 332.98885 * 5 4 2 16 16 H 1.08994 * 113.48196 * 141.77485 * 15 5 4 17 17 C 1.52999 * 113.47591 * 272.18633 * 15 5 4 18 18 H 1.09007 * 109.46728 * 192.95346 * 1 2 3 19 19 H 1.08997 * 109.47170 * 312.94939 * 1 2 3 20 20 H 1.08994 * 109.47204 * 72.95951 * 1 2 3 21 21 H 1.08999 * 113.47967 * 24.90572 * 4 2 1 22 22 H 1.08994 * 113.47798 * 254.43800 * 4 2 1 23 23 H 1.09002 * 109.47401 * 145.96902 * 6 5 4 24 24 H 1.09001 * 109.46874 * 25.96914 * 6 5 4 25 25 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47105 * 40.49435 * 17 15 5 27 27 H 1.09003 * 109.47249 * 160.49424 * 17 15 5 28 28 H 1.09003 * 109.47132 * 280.49052 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1586 -0.9588 1.0209 5 7 3.1619 -1.3059 -0.0028 6 6 3.4331 -2.7496 -0.0061 7 6 4.6265 -3.0385 0.8677 8 1 5.1325 -2.2304 1.3751 9 6 5.0716 -4.3345 1.0203 10 7 4.4551 -5.3184 0.4029 11 14 6.5504 -4.6925 2.1040 12 1 6.0950 -4.9486 3.4940 13 1 7.2638 -5.8886 1.5885 14 1 7.4680 -3.5251 2.0909 15 6 2.1586 -0.9543 -1.0251 16 1 2.5810 -0.4445 -1.8909 17 6 1.2479 -2.1213 -1.4119 18 1 -0.3633 -1.0016 0.2304 19 1 -0.3633 0.7002 0.7522 20 1 -0.3633 0.3011 -0.9825 21 1 1.5091 -1.7911 1.2921 22 1 2.5811 -0.4529 1.8889 23 1 3.6405 -3.0781 -1.0245 24 1 2.5638 -3.2834 0.3780 25 1 4.7685 -6.2302 0.5100 26 1 0.9807 -2.6853 -0.5183 27 1 0.3433 -1.7358 -1.8822 28 1 1.7708 -2.7741 -2.1108 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306640288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = 3.295174 kcal Electronic energy + Delta-G solvation = -9989.092820 eV Core-core repulsion = 8232.961551 eV Total energy + Delta-G solvation = -1756.131268 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.44021 -35.21510 -32.73084 -30.48224 -29.33162 -25.99836 -25.05374 -22.47170 -19.08919 -18.61239 -17.10926 -16.71857 -15.99816 -15.50468 -14.74582 -14.08138 -13.63390 -13.47523 -13.26310 -12.94204 -12.85292 -12.67790 -12.37141 -12.13272 -11.94077 -11.42660 -11.04134 -10.91105 -10.61098 -9.49638 -8.23980 -6.34806 1.37558 1.39624 1.51690 2.38162 3.07260 3.38096 3.50628 3.93253 4.32817 4.38939 4.47290 4.63846 4.69436 4.84570 4.87108 4.94960 4.99177 5.04542 5.10693 5.28182 5.34021 5.54407 5.62600 5.83886 6.13564 6.54466 6.80482 7.34918 8.86915 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.087884 B = 0.012158 C = 0.011365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.526589 B = 2302.367795 C = 2463.031879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 H 0.107 0.893 4 C 0.005 3.995 5 N -0.494 5.494 6 C 0.180 3.820 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.972 3.028 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.267 1.267 15 C 0.013 3.987 16 H 0.086 0.914 17 C -0.147 4.147 18 H 0.048 0.952 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.070 0.930 23 H -0.003 1.003 24 H -0.016 1.016 25 H 0.266 0.734 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 8.172 -0.636 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.125 0.875 4 C -0.124 4.124 5 N -0.216 5.216 6 C 0.053 3.947 7 C -0.571 4.571 8 H 0.073 0.927 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.796 3.204 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.192 1.192 15 C -0.096 4.096 16 H 0.104 0.896 17 C -0.205 4.205 18 H 0.067 0.933 19 H 0.091 0.909 20 H 0.093 0.907 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.015 0.985 24 H 0.002 0.998 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.309 8.261 -0.665 10.416 hybrid contribution 0.191 -1.253 0.403 1.330 sum -6.118 7.008 -0.263 9.306 Atomic orbital electron populations 1.21681 0.92478 1.01962 1.03016 1.22740 0.96818 0.97825 0.94061 0.87461 1.23805 0.93674 0.98134 0.96812 1.68955 1.29038 1.18821 1.04808 1.19811 0.94858 0.84952 0.95052 1.21514 1.14063 0.92886 1.28654 0.92729 1.25953 1.00443 0.95807 0.97497 1.70078 1.42561 1.00224 1.44529 0.85348 0.78641 0.77801 0.78622 1.19551 1.20309 1.19168 1.23413 0.92709 0.96604 0.96877 0.89593 1.21923 1.00128 0.97581 1.00862 0.93276 0.90946 0.90680 0.93052 0.91114 0.98500 0.99830 0.92565 0.94037 0.89030 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.62 71.98 0.62 -2.40 15 2 C -0.10 -2.85 4.65 -10.45 -0.05 -2.90 15 3 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 4 C 0.01 0.20 6.98 83.58 0.58 0.78 15 5 N -0.49 -22.96 6.32 -906.55 -5.73 -28.69 15 6 C 0.18 10.10 3.66 85.56 0.31 10.41 15 7 C -0.53 -32.23 9.39 25.60 0.24 -31.99 15 8 H 0.05 3.29 7.81 -2.91 -0.02 3.27 15 9 C 0.00 0.06 5.46 84.66 0.46 0.52 15 10 N -0.93 -57.77 13.29 21.45 0.28 -57.49 15 11 Si 0.97 45.83 29.54 68.60 2.03 47.86 15 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 15 C 0.01 0.49 4.67 42.19 0.20 0.69 15 16 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 17 C -0.15 -5.12 7.11 71.98 0.51 -4.61 15 18 H 0.05 1.19 7.09 -2.38 -0.02 1.18 15 19 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.07 1.42 8.08 -2.39 -0.02 1.41 15 21 H 0.05 2.10 6.44 -2.39 -0.02 2.08 15 22 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.00 -0.19 7.47 -2.39 -0.02 -0.21 15 24 H -0.02 -0.94 6.01 -2.39 -0.01 -0.96 15 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 26 H 0.04 1.60 5.64 -2.39 -0.01 1.58 15 27 H 0.09 2.44 7.50 -2.39 -0.02 2.42 15 28 H 0.04 1.54 7.65 -2.39 -0.02 1.52 15 Total: -1.00 -66.67 225.57 0.58 -66.09 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.12 Total: 1.74 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 2.88 Total: -29.51 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -5.44 Total: -86.18 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -66.67 0.58 -66.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306640288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.383 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds