Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47270 * 120.00161 * 2 1 3 5 5 N 1.46505 * 115.54820 * 151.50303 * 4 2 1 6 6 C 1.36938 * 120.00170 * 294.77457 * 5 4 2 7 7 H 1.07991 * 120.00163 * 354.53259 * 6 5 4 8 8 C 1.38812 * 119.99630 * 174.53606 * 6 5 4 9 9 N 1.31613 * 120.00040 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99729 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47039 * 90.00147 * 10 8 6 12 12 H 1.48498 * 109.46804 * 209.99899 * 10 8 6 13 13 H 1.48501 * 109.47218 * 329.99775 * 10 8 6 14 14 C 1.53006 * 117.49764 * 5.80424 * 4 2 1 15 15 C 1.52992 * 117.50115 * 297.18104 * 4 2 1 16 16 H 1.09001 * 109.47291 * 56.08509 * 1 2 3 17 17 H 1.08997 * 109.46683 * 296.07832 * 1 2 3 18 18 H 1.09008 * 109.46538 * 176.08848 * 1 2 3 19 19 H 1.09004 * 109.46567 * 240.00321 * 2 1 3 20 20 H 1.09001 * 109.46772 * 60.00205 * 3 2 1 21 21 H 1.09004 * 109.46895 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47375 * 300.00317 * 3 2 1 23 23 H 0.96998 * 119.99284 * 114.77109 * 5 4 2 24 24 H 0.97010 * 119.99999 * 179.97438 * 9 8 6 25 25 H 1.08997 * 117.50055 * 359.97438 * 14 4 2 26 26 H 1.09003 * 117.49522 * 145.02090 * 14 4 2 27 27 H 1.08998 * 117.49943 * 214.98165 * 15 4 2 28 28 H 1.08998 * 117.50069 * 359.97001 * 15 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.3459 -1.3716 1.1144 6 6 3.5000 -2.4265 0.2549 7 1 2.6417 -2.8359 -0.2569 8 6 4.7595 -2.9697 0.0417 9 7 5.8056 -2.4706 0.6652 10 14 4.9697 -4.4092 -1.1302 11 1 5.2309 -3.8984 -2.4998 12 1 6.1142 -5.2452 -0.6870 13 1 3.7310 -5.2284 -1.1351 14 6 1.0026 -1.3982 2.1472 15 6 1.6912 -0.1122 2.6086 16 1 -0.3634 0.5734 -0.8528 17 1 -0.3632 0.4518 0.9230 18 1 -0.3633 -1.0254 -0.0701 19 1 1.8933 -0.5138 -0.8901 20 1 1.6766 1.9563 0.8900 21 1 3.1300 1.4425 0.0005 22 1 1.6766 1.9564 -0.8900 23 1 4.1013 -1.0549 1.6339 24 1 6.6858 -2.8504 0.5164 25 1 -0.0433 -1.3294 1.8482 26 1 1.2916 -2.3277 2.6378 27 1 2.4330 -0.1956 3.4028 28 1 1.0987 0.8026 2.6131 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307109208.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = 23.727987 kcal Electronic energy + Delta-G solvation = -9999.592200 eV Core-core repulsion = 8244.346965 eV Total energy + Delta-G solvation = -1755.245235 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.16227 -33.27760 -32.05500 -29.63193 -26.73883 -23.92098 -22.09013 -21.45880 -17.84950 -16.86620 -15.78548 -14.50244 -13.95279 -13.38205 -13.13406 -12.48225 -12.41481 -11.77340 -11.19890 -10.88929 -10.81172 -10.67134 -10.47059 -10.31274 -10.17394 -9.85700 -9.60601 -9.01355 -8.63884 -6.92201 -5.75212 -3.04029 3.44692 3.49880 3.51663 4.55047 4.70413 5.35413 5.45885 5.51873 5.65897 5.75005 5.88747 5.99671 6.09713 6.24536 6.30690 6.35018 6.46837 6.51064 6.63594 6.88298 6.92246 7.01211 7.14881 7.77009 8.44940 9.54319 10.13638 10.48459 11.47362 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057454 B = 0.014149 C = 0.013713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.226891 B = 1978.517498 C = 2041.352908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.135 4.135 4 C 0.156 3.844 5 N -0.694 5.694 6 C -0.231 4.231 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C -0.208 4.208 15 C -0.191 4.191 16 H 0.045 0.955 17 H 0.049 0.951 18 H 0.054 0.946 19 H 0.079 0.921 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.386 0.614 24 H 0.255 0.745 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 4.846 0.181 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.193 4.193 4 C 0.062 3.938 5 N -0.332 5.332 6 C -0.362 4.362 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C -0.248 4.248 15 C -0.228 4.228 16 H 0.064 0.936 17 H 0.068 0.932 18 H 0.073 0.927 19 H 0.098 0.902 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.220 0.780 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.426 4.696 0.052 9.646 hybrid contribution 0.471 -0.745 -0.386 0.962 sum -7.955 3.951 -0.335 8.889 Atomic orbital electron populations 1.21936 0.96499 1.01125 1.00499 1.20920 0.93689 0.95595 0.99123 1.21718 1.01666 0.95882 1.00006 1.20043 0.88520 0.96627 0.88560 1.41830 1.05039 1.36265 1.50105 1.19186 0.92868 1.06337 1.17825 0.91089 1.24770 0.95499 1.00185 1.00591 1.69669 0.98592 1.43832 1.46097 0.86188 0.77192 0.82121 0.80724 1.21702 1.21808 1.20730 1.23548 0.98145 0.96010 1.07138 1.23028 1.03935 0.96672 0.99195 0.93632 0.93169 0.92740 0.90223 0.93516 0.92377 0.93874 0.77959 0.93525 0.89673 0.89564 0.89657 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 7.78 37.16 0.29 -1.88 15 2 C -0.07 -1.35 3.11 -90.62 -0.28 -1.63 15 3 C -0.14 -2.26 9.00 37.16 0.33 -1.92 15 4 C 0.16 3.25 2.21 -131.82 -0.29 2.96 15 5 N -0.69 -17.93 5.49 -47.23 -0.26 -18.19 15 6 C -0.23 -6.51 9.51 -15.06 -0.14 -6.65 15 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 15 9 N -0.93 -28.50 13.06 55.49 0.72 -27.77 15 10 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 15 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 15 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 14 C -0.21 -3.94 9.46 -26.73 -0.25 -4.20 15 15 C -0.19 -3.43 9.28 -26.73 -0.25 -3.68 15 16 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 17 H 0.05 0.70 6.84 -51.93 -0.35 0.35 15 18 H 0.05 0.83 7.38 -51.92 -0.38 0.45 15 19 H 0.08 1.68 7.72 -51.93 -0.40 1.28 15 20 H 0.05 0.70 7.11 -51.93 -0.37 0.33 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.39 10.63 8.04 -40.82 -0.33 10.30 15 24 H 0.25 7.53 8.31 -40.82 -0.34 7.19 15 25 H 0.08 1.42 5.85 -51.93 -0.30 1.11 15 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 15 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.08 1.32 7.05 -51.93 -0.37 0.95 15 LS Contribution 232.13 15.07 3.50 3.50 Total: -1.00 -29.58 232.13 -5.92 -35.50 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.17 Total: 6.85 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.69 Total: -17.52 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.47 Total: -45.97 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.58 -5.92 -35.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307109208.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.228 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds