Wall clock time and date at job start Mon Mar 30 2020 01:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 C 1.52994 * 115.56046 * 34.30983 * 3 2 1 5 5 C 1.52999 * 117.49603 * 248.62133 * 3 2 1 6 6 C 1.53001 * 117.49826 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.51895 * 0.02562 * 6 3 2 8 8 N 1.46490 * 117.50029 * 214.97665 * 6 3 2 9 9 C 1.36935 * 120.00121 * 154.98464 * 8 6 3 10 10 H 1.07997 * 120.00139 * 0.02562 * 9 8 6 11 11 C 1.38816 * 120.00401 * 180.02562 * 9 8 6 12 12 N 1.31624 * 119.99569 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.46653 * 299.99639 * 13 11 9 16 16 H 1.48495 * 109.47483 * 60.00002 * 13 11 9 17 17 H 1.09003 * 109.47143 * 59.99746 * 1 2 3 18 18 H 1.09000 * 109.47278 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47590 * 300.00208 * 1 2 3 20 20 H 1.09002 * 109.47074 * 239.99897 * 2 1 3 21 21 H 1.09001 * 109.47108 * 119.99705 * 2 1 3 22 22 H 1.09006 * 109.46983 * 205.69035 * 4 3 2 23 23 H 1.09000 * 109.47573 * 325.68696 * 4 3 2 24 24 H 1.09003 * 109.47519 * 85.69055 * 4 3 2 25 25 H 1.08993 * 117.49743 * 145.02612 * 5 3 2 26 26 H 1.08997 * 117.49788 * 359.97438 * 5 3 2 27 27 H 0.97000 * 120.00577 * 334.99063 * 8 6 3 28 28 H 0.97001 * 119.99885 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 4.1887 0.7693 0.0006 8 7 4.0758 2.8050 0.7455 9 6 5.3600 2.7878 1.2206 10 1 5.9890 1.9275 1.0459 11 6 5.8534 3.8762 1.9270 12 7 5.0867 4.9245 2.1405 13 14 7.6054 3.8530 2.5745 14 1 7.8860 5.1242 3.2890 15 1 7.7720 2.7123 3.5107 16 1 8.5509 3.7037 1.4392 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.3351 3.4444 0.3695 23 1 0.1338 2.1708 0.6907 24 1 1.4776 2.4340 1.8280 25 1 2.5948 2.9874 -1.5409 26 1 2.8407 1.2455 -2.0950 27 1 3.5111 3.5779 0.9023 28 1 4.1770 4.9367 1.8039 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307213425.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:00 Heat of formation + Delta-G solvation = 0.791781 kcal Electronic energy + Delta-G solvation = -9781.252485 eV Core-core repulsion = 8025.012662 eV Total energy + Delta-G solvation = -1756.239823 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70728 -36.01926 -33.27559 -31.00789 -29.04985 -25.80917 -24.55420 -22.32861 -19.71147 -19.41613 -16.96232 -16.37652 -15.59408 -15.48632 -14.99392 -14.15798 -13.69617 -13.40264 -13.01123 -12.84620 -12.76592 -12.43113 -12.07157 -11.91035 -11.84410 -11.62534 -11.42607 -10.67675 -10.40777 -8.95559 -8.46958 -5.39106 1.57575 1.67919 1.84615 2.67792 2.99864 3.41534 3.52879 3.93393 4.04401 4.16950 4.29172 4.45032 4.63516 4.73749 4.88460 4.93270 4.95297 5.06103 5.17175 5.17913 5.35857 5.37625 5.54073 5.58868 6.40957 7.01233 7.91559 8.03759 9.04174 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.087989 B = 0.010918 C = 0.010565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.146029 B = 2564.025418 C = 2649.731010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.207 4.207 6 C 0.115 3.885 7 H 0.100 0.900 8 N -0.717 5.717 9 C -0.341 4.341 10 H 0.071 0.929 11 C -0.103 4.103 12 N -0.972 5.972 13 Si 1.133 2.867 14 H -0.292 1.292 15 H -0.275 1.275 16 H -0.276 1.276 17 H 0.057 0.943 18 H 0.068 0.932 19 H 0.055 0.945 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.034 0.966 23 H 0.087 0.913 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.363 0.637 28 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -9.096 -4.338 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.151 4.151 4 C -0.166 4.166 5 C -0.248 4.248 6 C 0.004 3.996 7 H 0.118 0.882 8 N -0.354 5.354 9 C -0.472 4.472 10 H 0.089 0.911 11 C -0.294 4.294 12 N -0.620 5.620 13 Si 0.956 3.044 14 H -0.218 1.218 15 H -0.201 1.201 16 H -0.202 1.202 17 H 0.076 0.924 18 H 0.087 0.913 19 H 0.074 0.926 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.053 0.947 23 H 0.105 0.895 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.196 0.804 28 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.287 -8.408 -3.502 10.531 hybrid contribution -1.375 -0.230 -0.870 1.643 sum -6.662 -8.637 -4.372 11.751 Atomic orbital electron populations 1.21787 0.94352 1.02148 1.01939 1.21001 0.96909 0.91885 1.01759 1.22177 0.95184 0.97329 1.00443 1.21254 1.00135 0.96774 0.98423 1.23767 1.07506 1.00772 0.92713 1.21278 0.91263 0.91468 0.95594 0.88231 1.42110 1.12387 1.16825 1.64059 1.20502 0.90762 1.04085 1.31823 0.91061 1.27384 1.09888 0.92486 0.99632 1.71006 1.08748 1.31693 1.50529 0.82578 0.69751 0.75827 0.76205 1.21778 1.20096 1.20150 0.92432 0.91311 0.92560 0.91097 0.92449 0.94667 0.89462 0.94503 0.91257 0.87562 0.80448 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.92 71.98 0.64 -2.51 15 2 C -0.08 -2.10 6.12 30.59 0.19 -1.91 15 3 C -0.15 -5.10 2.47 -52.18 -0.13 -5.23 15 4 C -0.11 -3.76 8.49 71.98 0.61 -3.15 15 5 C -0.21 -7.42 9.75 30.61 0.30 -7.12 15 6 C 0.12 4.94 6.32 45.01 0.28 5.22 15 7 H 0.10 4.18 8.12 -2.39 -0.02 4.16 15 8 N -0.72 -38.26 5.39 -322.88 -1.74 -40.00 15 9 C -0.34 -19.82 9.98 84.03 0.84 -18.98 15 10 H 0.07 3.99 7.82 -2.91 -0.02 3.97 15 11 C -0.10 -6.12 5.50 84.86 0.47 -5.65 15 12 N -0.97 -62.33 13.70 21.65 0.30 -62.03 15 13 Si 1.13 52.44 29.92 68.60 2.05 54.49 15 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 15 H -0.28 -11.76 7.11 99.48 0.71 -11.06 15 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 17 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 18 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 19 H 0.06 1.24 6.45 -2.39 -0.02 1.23 15 20 H 0.07 1.73 7.90 -2.39 -0.02 1.71 15 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.03 1.29 7.61 -2.38 -0.02 1.27 15 23 H 0.09 2.43 5.59 -2.39 -0.01 2.41 15 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.07 2.66 8.05 -2.39 -0.02 2.64 15 26 H 0.11 3.23 8.05 -2.39 -0.02 3.21 15 27 H 0.36 20.14 5.72 -92.71 -0.53 19.61 15 28 H 0.24 15.56 6.77 -92.71 -0.63 14.93 15 Total: -1.00 -66.16 232.51 4.55 -61.61 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.74 Total: 25.26 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 3.20 Total: -39.34 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.44 Total: -102.03 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.05 Total: 54.49 kcal Total: -66.16 4.55 -61.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213425.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.405 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds