Wall clock time and date at job start Mon Mar 30 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46794 * 2 1 4 4 C 1.53002 * 115.56416 * 325.68798 * 3 2 1 5 5 C 1.53001 * 117.49832 * 111.37861 * 3 2 1 6 6 C 1.53000 * 60.00201 * 107.48689 * 5 3 2 7 7 H 1.08999 * 117.51805 * 107.47874 * 6 5 3 8 8 N 1.46499 * 117.49929 * 252.51155 * 6 5 3 9 9 C 1.36931 * 120.00122 * 223.62100 * 8 6 5 10 10 H 1.08002 * 120.00098 * 0.02562 * 9 8 6 11 11 C 1.38812 * 120.00429 * 180.02562 * 9 8 6 12 12 N 1.31624 * 119.99535 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00187 * 180.27849 * 11 9 8 14 14 H 1.48497 * 109.47173 * 179.72427 * 13 11 9 15 15 H 1.48506 * 109.46866 * 299.71963 * 13 11 9 16 16 H 1.48501 * 109.47438 * 59.72083 * 13 11 9 17 17 H 1.08999 * 109.47569 * 300.00223 * 1 2 3 18 18 H 1.09002 * 109.47232 * 59.99929 * 1 2 3 19 19 H 1.09004 * 109.47115 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47202 * 239.99925 * 2 1 3 21 21 H 1.08999 * 109.46802 * 119.99806 * 2 1 3 22 22 H 1.09002 * 109.46960 * 274.31335 * 4 3 2 23 23 H 1.09004 * 109.46791 * 34.31242 * 4 3 2 24 24 H 1.09001 * 109.47104 * 154.31121 * 4 3 2 25 25 H 1.09007 * 117.49762 * 359.97438 * 5 3 2 26 26 H 1.08998 * 117.50017 * 214.97948 * 5 3 2 27 27 H 0.97001 * 119.99790 * 43.61617 * 8 6 5 28 28 H 0.97005 * 119.99717 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4450 -0.7780 5 6 2.7418 1.9437 1.2638 6 6 3.5550 1.6562 0.0000 7 1 3.9427 2.5107 -0.5546 8 7 4.4063 0.4640 0.0001 9 6 5.6788 0.5313 -0.5011 10 1 6.0551 1.4634 -0.8960 11 6 6.4853 -0.5985 -0.5016 12 7 6.0269 -1.7345 -0.0198 13 14 8.2239 -0.5048 -1.1781 14 1 8.8738 -1.8346 -1.0590 15 1 8.1781 -0.1024 -2.6068 16 1 9.0021 0.4973 -0.4063 17 1 -0.3634 0.5138 0.8899 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.8933 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 1.4776 2.4339 -1.8280 23 1 0.1338 2.1707 -0.6907 24 1 1.3350 3.4444 -0.3696 25 1 2.8399 1.2458 2.0954 26 1 2.5946 2.9875 1.5409 27 1 4.0685 -0.3731 0.3551 28 1 6.5906 -2.5239 -0.0198 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307213427.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:03 Heat of formation + Delta-G solvation = 1.557769 kcal Electronic energy + Delta-G solvation = -9778.908214 eV Core-core repulsion = 8022.701606 eV Total energy + Delta-G solvation = -1756.206608 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57951 -35.58021 -33.18687 -31.55123 -28.68144 -25.80054 -24.63486 -22.22934 -19.53057 -19.13500 -16.94954 -15.97307 -15.80406 -15.34951 -14.42338 -14.28230 -13.90383 -13.17118 -13.02111 -12.79469 -12.67217 -12.51176 -12.21366 -12.07727 -11.93144 -11.73344 -11.52452 -10.64973 -10.32023 -8.82924 -7.99818 -5.27751 1.46406 1.50241 1.56577 2.52959 3.06987 3.45456 3.73552 3.97470 4.15782 4.34232 4.38010 4.56309 4.71036 4.79134 4.98011 5.05928 5.06579 5.15051 5.25901 5.30888 5.38184 5.43599 5.48267 5.69412 6.22289 7.27277 8.02736 8.26577 9.23478 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.073708 B = 0.011708 C = 0.010896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.785791 B = 2391.021234 C = 2569.216383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.108 4.108 5 C -0.208 4.208 6 C 0.112 3.888 7 H 0.102 0.898 8 N -0.705 5.705 9 C -0.254 4.254 10 H 0.081 0.919 11 C -0.075 4.075 12 N -0.971 5.971 13 Si 0.982 3.018 14 H -0.294 1.294 15 H -0.275 1.275 16 H -0.276 1.276 17 H 0.061 0.939 18 H 0.070 0.930 19 H 0.055 0.945 20 H 0.040 0.960 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.376 0.624 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 6.669 -0.727 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.153 4.153 4 C -0.165 4.165 5 C -0.249 4.249 6 C 0.001 3.999 7 H 0.120 0.880 8 N -0.340 5.340 9 C -0.385 4.385 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.621 5.621 13 Si 0.810 3.190 14 H -0.220 1.220 15 H -0.201 1.201 16 H -0.202 1.202 17 H 0.080 0.920 18 H 0.089 0.911 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.208 0.792 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.759 6.705 -0.820 11.061 hybrid contribution 0.991 -0.693 0.065 1.211 sum -7.768 6.012 -0.755 9.852 Atomic orbital electron populations 1.21768 0.93539 1.01738 1.02519 1.20820 0.97105 0.93985 0.99915 1.22158 0.95590 0.96464 1.01071 1.21390 0.99497 0.96878 0.98720 1.23751 1.07620 1.01287 0.92240 1.21370 0.88153 0.91237 0.99189 0.87973 1.42107 1.12078 1.08110 1.71726 1.19721 0.90462 0.96093 1.32247 0.90153 1.25676 1.03037 0.95329 1.02692 1.69834 1.38213 1.00917 1.53100 0.85095 0.79152 0.76388 0.78409 1.22024 1.20104 1.20181 0.91981 0.91127 0.92630 0.94153 0.94415 0.92894 0.90200 0.91756 0.91413 0.87630 0.79184 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.92 71.98 0.64 -2.96 15 2 C -0.08 -2.84 5.12 30.60 0.16 -2.68 15 3 C -0.15 -5.16 2.47 -52.18 -0.13 -5.29 15 4 C -0.11 -2.85 9.49 71.98 0.68 -2.16 15 5 C -0.21 -7.48 9.75 30.59 0.30 -7.18 15 6 C 0.11 4.75 6.32 44.99 0.28 5.03 15 7 H 0.10 4.17 8.12 -2.39 -0.02 4.15 15 8 N -0.71 -37.63 5.39 -322.94 -1.74 -39.37 15 9 C -0.25 -14.55 9.98 84.03 0.84 -13.72 15 10 H 0.08 4.36 7.82 -2.91 -0.02 4.34 15 11 C -0.08 -4.40 5.50 84.86 0.47 -3.93 15 12 N -0.97 -60.64 13.06 21.65 0.28 -60.36 15 13 Si 0.98 46.57 29.55 68.60 2.03 48.59 15 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 17 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 18 H 0.07 1.61 6.45 -2.39 -0.02 1.60 15 19 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.04 1.60 8.14 -2.39 -0.02 1.59 15 21 H 0.04 1.46 7.61 -2.39 -0.02 1.44 15 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.08 1.78 5.59 -2.39 -0.01 1.77 15 24 H 0.06 1.51 7.90 -2.39 -0.02 1.49 15 25 H 0.07 2.64 8.05 -2.38 -0.02 2.62 15 26 H 0.11 3.19 8.05 -2.39 -0.02 3.17 15 27 H 0.38 21.41 6.89 -92.71 -0.64 20.78 15 28 H 0.25 15.27 8.31 -92.70 -0.77 14.50 15 Total: -1.00 -63.65 234.22 4.30 -59.35 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.49 Total: 24.67 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.24 Total: -32.90 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -1.46 Total: -99.72 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -63.65 4.30 -59.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213427.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.913 kcal (2) G-P(sol) polarization free energy of solvation -63.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds