Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99814 * 2 1 4 4 H 1.08001 * 120.00307 * 200.49101 * 3 2 1 5 5 C 1.38812 * 120.00146 * 20.48303 * 3 2 1 6 6 N 1.31622 * 119.99499 * 15.69145 * 5 3 2 7 7 Si 1.86794 * 120.00401 * 195.68503 * 5 3 2 8 8 H 1.48505 * 109.46906 * 90.00300 * 7 5 3 9 9 H 1.48495 * 109.47644 * 210.00468 * 7 5 3 10 10 H 1.48504 * 109.47163 * 330.00737 * 7 5 3 11 11 C 1.46499 * 120.00421 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47290 * 270.00135 * 11 2 1 13 13 C 1.53003 * 115.56120 * 325.69042 * 12 11 2 14 14 C 1.52995 * 117.49903 * 179.97438 * 12 11 2 15 15 C 1.52998 * 60.00220 * 252.51109 * 14 12 11 16 16 H 1.09000 * 109.47285 * 274.16750 * 1 2 3 17 17 H 1.09001 * 109.47261 * 34.17307 * 1 2 3 18 18 H 1.09005 * 109.46524 * 154.17002 * 1 2 3 19 19 H 0.97001 * 119.99688 * 179.97438 * 6 5 3 20 20 H 1.09002 * 109.47027 * 150.00048 * 11 2 1 21 21 H 1.08997 * 109.46696 * 30.00143 * 11 2 1 22 22 H 1.08995 * 109.46696 * 274.30630 * 13 12 11 23 23 H 1.08997 * 109.46912 * 34.30769 * 13 12 11 24 24 H 1.08993 * 109.47055 * 154.30908 * 13 12 11 25 25 H 1.09002 * 117.49697 * 145.02462 * 14 12 11 26 26 H 1.08998 * 117.50032 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.50071 * 107.48906 * 15 14 12 28 28 H 1.09004 * 117.50200 * 252.51287 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1784 1.2157 -0.3274 5 6 1.5214 2.3501 0.4207 6 7 0.3967 2.2819 1.1009 7 14 2.2722 4.0133 0.0216 8 1 1.7452 4.4946 -1.2807 9 1 1.9192 4.9846 1.0879 10 1 3.7493 3.8829 -0.0600 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 6 2.6989 -0.5800 2.4452 14 6 3.2097 -3.0219 1.6575 15 6 1.7087 -2.9490 1.9451 16 1 -0.3634 0.0747 1.0249 17 1 -0.3634 0.8502 -0.5772 18 1 -0.3632 -0.9251 -0.4478 19 1 -0.0422 3.0954 1.3952 20 1 3.1500 -1.1385 -0.5133 21 1 1.6085 -2.0285 -0.5129 22 1 3.7544 -0.3082 2.4341 23 1 2.0976 0.2867 2.1706 24 1 2.4201 -0.9136 3.4447 25 1 3.8836 -3.0803 2.5122 26 1 3.5257 -3.5712 0.7706 27 1 1.0376 -3.4501 1.2474 28 1 1.3952 -2.9594 2.9890 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307404008.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = 43.558445 kcal Electronic energy + Delta-G solvation = -10149.941630 eV Core-core repulsion = 8395.556308 eV Total energy + Delta-G solvation = -1754.385322 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.70401 -34.70531 -30.96061 -27.56872 -26.10817 -25.61774 -21.84738 -21.30837 -18.11564 -16.57722 -15.03087 -14.31794 -13.96107 -13.53505 -12.72634 -12.40638 -11.91007 -11.38295 -11.05089 -10.92412 -10.82384 -10.65566 -10.37445 -10.22643 -9.92301 -9.85455 -9.37190 -8.78544 -8.41673 -6.70601 -5.66910 -3.09347 3.42193 3.49043 3.49852 4.44025 4.58637 5.34938 5.51337 5.52718 5.60768 5.94793 6.11025 6.15565 6.39355 6.45718 6.62117 6.68548 6.81619 6.91988 6.95983 7.05050 7.44760 7.74920 7.80850 7.88174 8.45137 9.30383 9.94298 10.43434 11.37861 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.068642 B = 0.015098 C = 0.014261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.817237 B = 1854.145367 C = 1962.973199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.598 5.598 3 C -0.245 4.245 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.907 5.907 7 Si 0.900 3.100 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.184 3.816 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.194 4.194 15 C -0.182 4.182 16 H 0.028 0.972 17 H 0.042 0.958 18 H -0.005 1.005 19 H 0.251 0.749 20 H 0.047 0.953 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.113 0.887 24 H 0.026 0.974 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -6.273 0.206 6.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.319 5.319 3 C -0.375 4.375 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.056 3.944 12 C -0.125 4.125 13 C -0.171 4.171 14 C -0.232 4.232 15 C -0.219 4.219 16 H 0.046 0.954 17 H 0.061 0.939 18 H 0.014 0.986 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.131 0.869 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.410 -6.116 0.250 6.579 hybrid contribution 0.353 0.812 0.044 0.887 sum 2.763 -5.304 0.294 5.987 Atomic orbital electron populations 1.20767 0.82587 0.95403 0.99251 1.43978 1.01867 1.00620 1.85479 1.19183 0.96973 0.84875 1.36485 0.91379 1.24929 0.98057 0.98151 0.98808 1.70090 1.19373 1.26663 1.39111 0.86305 0.78637 0.84410 0.77548 1.21649 1.21893 1.20580 1.20419 0.95445 0.88058 0.90485 1.22668 1.00945 0.88452 1.00459 1.21366 1.01351 0.99887 0.94485 1.22940 0.94357 1.03625 1.02229 1.22983 0.93973 1.03953 1.00993 0.95376 0.93893 0.98607 0.93843 0.93498 0.94410 0.94181 0.86888 0.95471 0.90026 0.89805 0.89839 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 9.02 59.85 0.54 4.67 15 2 N -0.60 -15.15 2.19 -181.11 -0.40 -15.54 15 3 C -0.25 -6.69 7.72 -15.06 -0.12 -6.81 15 4 H 0.07 1.84 7.86 -52.49 -0.41 1.43 15 5 C 0.00 -0.04 4.93 -17.43 -0.09 -0.13 15 6 N -0.91 -26.18 10.72 55.49 0.60 -25.59 15 7 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 15 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 C 0.18 3.95 5.89 -4.04 -0.02 3.92 15 12 C -0.12 -2.44 2.57 -154.51 -0.40 -2.84 15 13 C -0.11 -2.48 9.37 37.16 0.35 -2.14 15 14 C -0.19 -3.20 9.97 -26.73 -0.27 -3.47 15 15 C -0.18 -3.17 9.82 -26.73 -0.26 -3.43 15 16 H 0.03 0.76 7.45 -51.93 -0.39 0.37 15 17 H 0.04 1.15 7.18 -51.93 -0.37 0.77 15 18 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 15 19 H 0.25 7.09 8.31 -40.82 -0.34 6.75 15 20 H 0.05 0.99 8.03 -51.93 -0.42 0.57 15 21 H 0.04 0.75 7.62 -51.93 -0.40 0.36 15 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.11 2.95 5.53 -51.93 -0.29 2.66 15 24 H 0.03 0.54 7.90 -51.93 -0.41 0.13 15 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.08 1.38 8.05 -51.93 -0.42 0.96 15 28 H 0.08 1.38 8.05 -51.93 -0.42 0.96 15 LS Contribution 231.37 15.07 3.49 3.49 Total: -1.00 -28.23 231.37 -5.94 -34.17 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.33 Total: -3.19 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.26 Total: -10.22 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.20 Total: -41.13 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.23 -5.94 -34.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307404008.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.726 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds