Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99814 * 2 1 4 4 H 1.08001 * 120.00307 * 200.49101 * 3 2 1 5 5 C 1.38812 * 120.00146 * 20.48303 * 3 2 1 6 6 N 1.31622 * 119.99499 * 15.69145 * 5 3 2 7 7 Si 1.86794 * 120.00401 * 195.68503 * 5 3 2 8 8 H 1.48505 * 109.46906 * 90.00300 * 7 5 3 9 9 H 1.48495 * 109.47644 * 210.00468 * 7 5 3 10 10 H 1.48504 * 109.47163 * 330.00737 * 7 5 3 11 11 C 1.46499 * 120.00421 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47290 * 270.00135 * 11 2 1 13 13 C 1.53003 * 115.56120 * 325.69042 * 12 11 2 14 14 C 1.52995 * 117.49903 * 179.97438 * 12 11 2 15 15 C 1.52998 * 60.00220 * 252.51109 * 14 12 11 16 16 H 1.09000 * 109.47285 * 274.16750 * 1 2 3 17 17 H 1.09001 * 109.47261 * 34.17307 * 1 2 3 18 18 H 1.09005 * 109.46524 * 154.17002 * 1 2 3 19 19 H 0.97001 * 119.99688 * 179.97438 * 6 5 3 20 20 H 1.09002 * 109.47027 * 150.00048 * 11 2 1 21 21 H 1.08997 * 109.46696 * 30.00143 * 11 2 1 22 22 H 1.08995 * 109.46696 * 274.30630 * 13 12 11 23 23 H 1.08997 * 109.46912 * 34.30769 * 13 12 11 24 24 H 1.08993 * 109.47055 * 154.30908 * 13 12 11 25 25 H 1.09002 * 117.49697 * 145.02462 * 14 12 11 26 26 H 1.08998 * 117.50032 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.50071 * 107.48906 * 15 14 12 28 28 H 1.09004 * 117.50200 * 252.51287 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1784 1.2157 -0.3274 5 6 1.5214 2.3501 0.4207 6 7 0.3967 2.2819 1.1009 7 14 2.2722 4.0133 0.0216 8 1 1.7452 4.4946 -1.2807 9 1 1.9192 4.9846 1.0879 10 1 3.7493 3.8829 -0.0600 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 6 2.6989 -0.5800 2.4452 14 6 3.2097 -3.0219 1.6575 15 6 1.7087 -2.9490 1.9451 16 1 -0.3634 0.0747 1.0249 17 1 -0.3634 0.8502 -0.5772 18 1 -0.3632 -0.9251 -0.4478 19 1 -0.0422 3.0954 1.3952 20 1 3.1500 -1.1385 -0.5133 21 1 1.6085 -2.0285 -0.5129 22 1 3.7544 -0.3082 2.4341 23 1 2.0976 0.2867 2.1706 24 1 2.4201 -0.9136 3.4447 25 1 3.8836 -3.0803 2.5122 26 1 3.5257 -3.5712 0.7706 27 1 1.0376 -3.4501 1.2474 28 1 1.3952 -2.9594 2.9890 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307404008.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = 28.001668 kcal Electronic energy + Delta-G solvation = -10150.616222 eV Core-core repulsion = 8395.556308 eV Total energy + Delta-G solvation = -1755.059914 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.28295 -36.57591 -32.98864 -29.24073 -27.94616 -27.65534 -23.31567 -23.12743 -19.71056 -18.62809 -16.86169 -16.00597 -15.64728 -15.46246 -14.50761 -14.19430 -13.64074 -13.16976 -12.84469 -12.78206 -12.61845 -12.37840 -12.12233 -12.01543 -11.88626 -11.77226 -10.92013 -10.54051 -10.23572 -8.73967 -7.76668 -5.20644 1.48149 1.49626 1.57463 2.55067 3.04375 3.36683 3.73806 4.06297 4.17976 4.32589 4.50254 4.82991 4.84444 4.88629 4.96376 5.06074 5.25903 5.27526 5.34978 5.37183 5.46291 5.68875 5.76035 5.93850 6.38135 7.21542 7.94152 8.37924 9.26739 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.068642 B = 0.015098 C = 0.014261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.817237 B = 1854.145367 C = 1962.973199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.611 5.611 3 C -0.245 4.245 4 H 0.067 0.933 5 C -0.052 4.052 6 N -0.935 5.935 7 Si 0.959 3.041 8 H -0.289 1.289 9 H -0.298 1.298 10 H -0.271 1.271 11 C 0.182 3.818 12 C -0.157 4.157 13 C -0.106 4.106 14 C -0.163 4.163 15 C -0.175 4.175 16 H 0.002 0.998 17 H 0.016 0.984 18 H 0.026 0.974 19 H 0.245 0.755 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -7.663 -0.071 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.333 5.333 3 C -0.376 4.376 4 H 0.085 0.915 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.789 3.211 8 H -0.216 1.216 9 H -0.225 1.225 10 H -0.196 1.196 11 C 0.056 3.944 12 C -0.159 4.159 13 C -0.163 4.163 14 C -0.200 4.200 15 C -0.212 4.212 16 H 0.020 0.980 17 H 0.035 0.965 18 H 0.045 0.955 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.404 -7.536 -0.036 8.270 hybrid contribution 0.075 1.165 0.133 1.175 sum 3.479 -6.371 0.097 7.260 Atomic orbital electron populations 1.20498 0.82876 0.95726 0.97433 1.44160 1.01996 1.01609 1.85530 1.19383 0.96919 0.85920 1.35338 0.91502 1.25593 0.98778 1.01103 0.99257 1.70246 1.20704 1.26803 1.40481 0.85372 0.78343 0.80588 0.76828 1.21596 1.22455 1.19550 1.20539 0.95269 0.86800 0.91819 1.22408 1.05255 0.89385 0.98866 1.21177 1.00394 0.99106 0.95641 1.23013 0.93952 0.99719 1.03363 1.23065 0.95127 1.01578 1.01423 0.98005 0.96482 0.95524 0.94540 0.93479 0.92576 0.94172 0.91414 0.94490 0.88727 0.87732 0.88684 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 9.02 127.77 1.15 10.20 15 2 N -0.61 -30.74 2.19 -726.92 -1.59 -32.33 15 3 C -0.25 -13.40 7.72 84.03 0.65 -12.75 15 4 H 0.07 3.60 7.86 -2.91 -0.02 3.58 15 5 C -0.05 -2.94 4.93 84.86 0.42 -2.52 15 6 N -0.93 -55.29 10.72 21.65 0.23 -55.06 15 7 Si 0.96 45.47 29.58 68.60 2.03 47.50 15 8 H -0.29 -13.57 7.11 99.48 0.71 -12.86 15 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 15 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 11 C 0.18 7.48 5.89 86.38 0.51 7.99 15 12 C -0.16 -5.92 2.57 -52.18 -0.13 -6.05 15 13 C -0.11 -4.55 9.37 71.98 0.67 -3.87 15 14 C -0.16 -4.72 9.97 30.59 0.31 -4.42 15 15 C -0.17 -5.52 9.82 30.59 0.30 -5.22 15 16 H 0.00 0.09 7.45 -2.39 -0.02 0.07 15 17 H 0.02 0.90 7.18 -2.39 -0.02 0.89 15 18 H 0.03 1.14 7.85 -2.38 -0.02 1.12 15 19 H 0.25 14.21 8.31 -92.71 -0.77 13.44 15 20 H 0.05 1.90 8.03 -2.39 -0.02 1.88 15 21 H 0.06 2.07 7.62 -2.39 -0.02 2.06 15 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.07 3.57 5.53 -2.39 -0.01 3.56 15 24 H 0.04 1.44 7.90 -2.39 -0.02 1.43 15 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 27 H 0.09 2.78 8.05 -2.39 -0.02 2.76 15 28 H 0.08 2.62 8.05 -2.39 -0.02 2.61 15 Total: -1.00 -60.00 231.37 5.66 -54.34 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.11 Total: 2.18 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.88 Total: -16.65 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -1.36 Total: -87.38 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -60.00 5.66 -54.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307404008.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.347 kcal (2) G-P(sol) polarization free energy of solvation -60.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds