Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 112.85212 * 2 1 4 4 C 1.53783 * 113.61122 * 228.69486 * 2 1 3 5 5 C 1.53782 * 87.08212 * 220.02111 * 4 2 1 6 6 H 1.09002 * 113.68975 * 270.87465 * 5 4 2 7 7 N 1.46498 * 113.61718 * 139.98032 * 5 4 2 8 8 C 1.36943 * 119.99752 * 107.22616 * 7 5 4 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 5 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 5 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47290 * 120.00044 * 12 10 8 15 15 H 1.48503 * 109.47163 * 240.00049 * 12 10 8 16 16 C 1.53781 * 87.08215 * 25.43395 * 5 4 2 17 17 H 1.09000 * 113.61722 * 89.19760 * 16 5 4 18 18 C 1.52994 * 113.61762 * 220.02112 * 16 5 4 19 19 H 1.08997 * 109.46728 * 288.80211 * 1 2 3 20 20 H 1.08999 * 109.47129 * 48.80244 * 1 2 3 21 21 H 1.09000 * 109.47474 * 168.80301 * 1 2 3 22 22 H 1.09002 * 113.61240 * 105.47152 * 4 2 1 23 23 H 1.08999 * 113.61823 * 334.56959 * 4 2 1 24 24 H 0.97001 * 120.00384 * 287.50972 * 7 5 4 25 25 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 26 26 H 1.09004 * 109.47194 * 40.49363 * 18 16 5 27 27 H 1.08999 * 109.47554 * 160.49103 * 18 16 5 28 28 H 1.08998 * 109.47513 * 280.49644 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1460 -0.9301 -1.0585 5 6 3.1923 -1.3137 0.0012 6 1 4.0717 -0.6697 0.0015 7 7 3.5309 -2.7390 0.0025 8 6 4.7431 -3.1552 -0.4800 9 1 5.4511 -2.4322 -0.8574 10 6 5.0617 -4.5063 -0.4840 11 7 4.1985 -5.3873 -0.0246 12 14 6.7154 -5.0739 -1.1415 13 1 7.4984 -3.8965 -1.5950 14 1 7.4598 -5.7788 -0.0671 15 1 6.5030 -5.9978 -2.2846 16 6 2.1461 -0.9282 1.0602 17 1 1.4954 -1.7527 1.3516 18 6 2.7342 -0.1829 2.2599 19 1 -0.3633 0.3312 0.9728 20 1 -0.3633 0.6769 -0.7732 21 1 -0.3634 -1.0081 -0.1996 22 1 2.5650 -0.4006 -1.9142 23 1 1.4945 -1.7548 -1.3474 24 1 2.8950 -3.3884 0.3414 25 1 4.4213 -6.3314 -0.0271 26 1 3.4844 0.5282 1.9138 27 1 1.9398 0.3518 2.7806 28 1 3.1975 -0.8975 2.9401 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307408708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 12.563638 kcal Electronic energy + Delta-G solvation = -9812.463975 eV Core-core repulsion = 8056.734618 eV Total energy + Delta-G solvation = -1755.729357 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.76301 -33.59447 -30.60063 -29.68441 -27.80137 -23.92300 -22.15106 -20.80810 -18.97273 -16.88157 -14.95835 -14.25787 -13.78998 -13.67042 -13.19061 -12.58929 -12.23814 -12.14361 -11.57237 -11.05766 -10.99597 -10.98718 -10.63879 -10.31286 -10.07178 -9.78293 -9.49323 -9.22210 -8.79199 -6.88495 -5.73848 -3.01642 3.45164 3.50749 3.53095 4.62848 5.08069 5.27302 5.29062 5.52532 5.76422 5.85011 5.95005 6.00463 6.10611 6.15417 6.23072 6.30658 6.38283 6.48882 6.57967 6.68024 6.71497 7.09803 7.28249 7.74250 8.45348 9.56077 10.16130 10.50606 11.48955 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.078435 B = 0.011362 C = 0.011087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.898050 B = 2463.699743 C = 2524.854125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.079 0.921 4 C -0.164 4.164 5 C 0.169 3.831 6 H 0.073 0.927 7 N -0.714 5.714 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.125 4.125 17 H 0.084 0.916 18 C -0.134 4.134 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.384 0.616 25 H 0.254 0.746 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 9.446 1.144 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.205 4.205 5 C 0.057 3.943 6 H 0.091 0.909 7 N -0.352 5.352 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.145 4.145 17 H 0.102 0.898 18 C -0.191 4.191 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.218 0.782 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.365 9.394 1.081 10.415 hybrid contribution 0.620 -0.619 -0.289 0.922 sum -3.745 8.776 0.792 9.574 Atomic orbital electron populations 1.21680 0.95778 1.01390 1.00550 1.22405 0.94572 0.97922 0.98434 0.90222 1.23863 1.00664 0.98364 0.97612 1.21672 0.93189 0.87196 0.92206 0.90875 1.42427 1.18006 1.00943 1.73777 1.19376 0.93253 0.91406 1.33048 0.91106 1.24757 0.98344 0.95944 1.02082 1.69677 1.35117 1.01056 1.52413 0.86119 0.83597 0.78390 0.78125 1.20554 1.21900 1.21897 1.23151 0.99101 0.97773 0.94466 0.89812 1.21637 0.99751 0.99708 0.98049 0.93300 0.93426 0.92778 0.93014 0.90640 0.78185 0.93589 0.93198 0.93752 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.71 37.16 0.36 -1.48 15 2 C -0.11 -1.77 3.92 -89.80 -0.35 -2.12 15 3 H 0.08 1.14 8.10 -51.93 -0.42 0.72 15 4 C -0.16 -3.02 7.43 -25.92 -0.19 -3.22 15 5 C 0.17 3.52 4.03 -67.12 -0.27 3.25 15 6 H 0.07 1.53 7.97 -51.93 -0.41 1.11 15 7 N -0.71 -18.55 5.40 -52.64 -0.28 -18.84 15 8 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 15 9 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 15 11 N -0.93 -28.76 13.06 55.49 0.72 -28.03 15 12 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 15 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 14 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 16 C -0.12 -2.18 3.67 -89.81 -0.33 -2.51 15 17 H 0.08 1.54 8.08 -51.93 -0.42 1.12 15 18 C -0.13 -2.08 9.68 37.15 0.36 -1.72 15 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.05 0.76 7.94 -51.93 -0.41 0.35 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.07 1.48 7.96 -51.93 -0.41 1.07 15 24 H 0.38 10.58 7.92 -40.82 -0.32 10.25 15 25 H 0.25 7.54 8.31 -40.82 -0.34 7.20 15 26 H 0.05 0.73 8.01 -51.93 -0.42 0.32 15 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 236.08 15.07 3.56 3.56 Total: -1.00 -29.87 236.08 -6.17 -36.05 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.48 Total: 4.88 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.67 Total: -15.32 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.44 Total: -46.87 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.87 -6.17 -36.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307408708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.612 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds