Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 112.90591 * 2 1 4 4 C 1.53784 * 113.61356 * 131.24333 * 2 1 3 5 5 C 1.53783 * 87.07507 * 89.12014 * 4 2 1 6 6 C 1.53773 * 113.61613 * 228.74645 * 2 1 3 7 7 H 1.08994 * 113.69357 * 156.32314 * 6 2 1 8 8 N 1.46901 * 113.61460 * 25.42847 * 6 2 1 9 9 C 1.46895 * 110.99820 * 157.99950 * 8 6 2 10 10 C 1.50706 * 109.47182 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 H 1.08995 * 109.46933 * 191.25932 * 1 2 3 19 19 H 1.09000 * 109.47079 * 311.25671 * 1 2 3 20 20 H 1.08992 * 109.47263 * 71.25123 * 1 2 3 21 21 H 1.08998 * 113.61465 * 334.56915 * 4 2 1 22 22 H 1.08998 * 113.61336 * 203.66071 * 4 2 1 23 23 H 1.09004 * 113.61365 * 270.87888 * 5 4 2 24 24 H 1.09006 * 113.61253 * 139.98371 * 5 4 2 25 25 H 1.00907 * 110.99760 * 34.04748 * 8 6 2 26 26 H 1.09001 * 109.47613 * 60.00522 * 9 8 6 27 27 H 1.09006 * 109.47521 * 300.00140 * 9 8 6 28 28 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1460 -0.9289 1.0595 5 6 2.0930 -2.0424 0.0002 6 6 2.1460 -0.9290 -1.0592 7 1 3.1590 -0.6509 -1.3499 8 7 1.2680 -1.1712 -2.2118 9 6 2.0437 -1.5977 -3.3841 10 6 1.1113 -1.8354 -4.5440 11 1 0.0488 -1.6844 -4.4225 12 6 1.6147 -2.2458 -5.7602 13 7 2.9085 -2.4302 -5.9080 14 14 0.4590 -2.5412 -7.1977 15 1 1.2431 -2.9722 -8.3828 16 1 -0.5179 -3.6002 -6.8380 17 1 -0.2670 -1.2852 -7.5153 18 1 -0.3633 -1.0078 0.2006 19 1 -0.3633 0.6777 0.7726 20 1 -0.3633 0.3303 -0.9730 21 1 1.4945 -1.1084 1.9147 22 1 3.1591 -0.6497 1.3490 23 1 1.1569 -2.6009 0.0002 24 1 2.9717 -2.6874 0.0002 25 1 0.7141 -0.3544 -2.4223 26 1 2.5769 -2.5194 -3.1513 27 1 2.7605 -0.8200 -3.6481 28 1 3.5086 -2.2772 -5.1614 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307547516.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = 3.024459 kcal Electronic energy + Delta-G solvation = -9747.885031 eV Core-core repulsion = 7991.742024 eV Total energy + Delta-G solvation = -1756.143007 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.01106 -34.17903 -31.75900 -29.07314 -26.19222 -23.43178 -23.25246 -21.63471 -18.10135 -16.79292 -15.76573 -14.88189 -14.18625 -13.66958 -13.18312 -12.59301 -12.02881 -12.01567 -11.85742 -11.55032 -11.04564 -10.75611 -10.58119 -10.32860 -10.08256 -9.93694 -9.65747 -8.55652 -8.39095 -7.36022 -6.35565 -4.04154 3.45888 3.48761 3.67242 4.55375 4.84680 4.91522 5.03367 5.32679 5.41453 5.52426 5.71955 5.88180 5.93442 6.01038 6.06814 6.20328 6.34308 6.50073 6.71803 6.77290 7.03543 7.20150 7.86430 8.20731 8.52084 8.61169 8.89860 9.68038 11.04293 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.088682 B = 0.010408 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.659938 B = 2689.527648 C = 2871.411522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 H 0.065 0.935 4 C -0.139 4.139 5 C -0.125 4.125 6 C 0.060 3.940 7 H 0.058 0.942 8 N -0.669 5.669 9 C 0.182 3.818 10 C -0.595 4.595 11 H 0.055 0.945 12 C 0.013 3.987 13 N -0.914 5.914 14 Si 1.074 2.926 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.288 1.288 18 H 0.060 0.940 19 H 0.046 0.954 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.331 0.669 26 H 0.018 0.982 27 H -0.026 1.026 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 3.740 10.248 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 H 0.084 0.916 4 C -0.177 4.177 5 C -0.163 4.163 6 C -0.051 4.051 7 H 0.076 0.924 8 N -0.300 5.300 9 C 0.055 3.945 10 C -0.634 4.634 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.902 3.098 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.215 1.215 18 H 0.079 0.921 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.150 0.850 26 H 0.036 0.964 27 H -0.008 1.008 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.965 2.632 8.823 9.673 hybrid contribution 0.631 1.286 1.371 1.983 sum -2.333 3.918 10.194 11.168 Atomic orbital electron populations 1.21415 0.93494 1.01849 1.01333 1.22593 0.96549 0.97617 0.96939 0.91643 1.22835 1.00304 0.97875 0.96683 1.22988 1.01942 0.96357 0.95057 1.23002 0.95546 0.95504 0.91065 0.92426 1.60746 1.24666 1.38399 1.06172 1.19696 0.93086 0.94051 0.87675 1.22028 0.94934 1.50007 0.96436 0.92643 1.25881 0.98617 0.93989 1.00521 1.70792 1.02978 1.46283 1.35038 0.83472 0.74478 0.76478 0.75359 1.20834 1.21362 1.21487 0.92059 0.93478 0.92022 0.91687 0.90842 0.89585 0.92553 0.85047 0.96446 1.00836 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.98 37.16 0.33 -1.41 15 2 C -0.12 -1.76 4.44 -89.81 -0.40 -2.16 15 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 4 C -0.14 -1.89 7.65 -25.92 -0.20 -2.09 15 5 C -0.13 -2.07 7.53 -25.92 -0.20 -2.26 15 6 C 0.06 1.12 4.00 -66.90 -0.27 0.85 15 7 H 0.06 1.13 7.89 -51.93 -0.41 0.72 15 8 N -0.67 -14.94 6.00 -107.14 -0.64 -15.59 15 9 C 0.18 4.94 4.61 -4.98 -0.02 4.91 15 10 C -0.60 -17.55 9.32 -34.44 -0.32 -17.88 15 11 H 0.06 1.62 7.81 -52.48 -0.41 1.21 15 12 C 0.01 0.40 5.46 -17.82 -0.10 0.30 15 13 N -0.91 -28.66 13.65 55.43 0.76 -27.90 15 14 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 15 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 15 18 H 0.06 0.89 7.34 -51.93 -0.38 0.51 15 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.06 0.91 6.79 -51.93 -0.35 0.56 15 21 H 0.06 0.79 8.10 -51.93 -0.42 0.37 15 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.09 1.48 7.65 -51.93 -0.40 1.08 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.33 7.12 7.08 -39.29 -0.28 6.85 15 26 H 0.02 0.51 8.01 -51.93 -0.42 0.09 15 27 H -0.03 -0.73 8.00 -51.93 -0.42 -1.15 15 28 H 0.27 8.36 7.22 -40.82 -0.29 8.06 15 LS Contribution 231.32 15.07 3.49 3.49 Total: -1.00 -30.93 231.32 -6.91 -37.85 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.26 Total: 1.16 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -1.17 Total: -19.73 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.11 Total: -43.49 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.93 -6.91 -37.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307547516.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.869 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds