Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 112.91047 * 2 1 4 4 C 1.53962 * 113.53645 * 228.74727 * 2 1 3 5 5 C 1.53786 * 87.01719 * 270.81227 * 4 2 1 6 6 C 1.53781 * 87.17350 * 334.63802 * 5 4 2 7 7 H 1.08997 * 113.61223 * 270.84552 * 6 5 4 8 8 N 1.46899 * 113.61244 * 140.02446 * 6 5 4 9 9 C 1.46897 * 111.00054 * 104.50826 * 8 6 5 10 10 C 1.50695 * 109.47437 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99781 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00336 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00050 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00081 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46921 * 60.00100 * 14 12 10 16 16 H 1.48503 * 109.46868 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46963 * 299.99871 * 14 12 10 18 18 H 1.08998 * 109.47320 * 288.75281 * 1 2 3 19 19 H 1.08999 * 109.47324 * 48.74872 * 1 2 3 20 20 H 1.09006 * 109.47299 * 168.74894 * 1 2 3 21 21 H 1.08993 * 113.61598 * 156.29209 * 4 2 1 22 22 H 1.09000 * 113.66569 * 25.33565 * 4 2 1 23 23 H 1.09002 * 113.61357 * 220.04719 * 5 4 2 24 24 H 1.09002 * 113.61608 * 89.22881 * 5 4 2 25 25 H 1.00909 * 110.99525 * 228.45856 * 8 6 5 26 26 H 1.08999 * 109.46943 * 300.00070 * 9 8 6 27 27 H 1.08998 * 109.47151 * 59.99569 * 9 8 6 28 28 H 0.97000 * 120.00417 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1448 -0.9307 -1.0612 5 6 2.0929 -2.0426 0.0000 6 6 2.1460 -0.9291 1.0593 7 1 3.1590 -0.6499 1.3489 8 7 1.2694 -1.1721 2.2128 9 6 2.0467 -1.5977 3.3843 10 6 1.1160 -1.8364 4.5452 11 1 0.0532 -1.6864 4.4248 12 6 1.6210 -2.2462 5.7609 13 7 2.9152 -2.4283 5.9076 14 14 0.4672 -2.5413 7.2001 15 1 -0.5098 -3.6006 6.8420 16 1 1.2531 -2.9717 8.3843 17 1 -0.2587 -1.2853 7.5181 18 1 -0.3634 0.3304 0.9731 19 1 -0.3634 0.6776 -0.7726 20 1 -0.3634 -1.0080 -0.2005 21 1 3.1574 -0.6521 -1.3524 22 1 1.4923 -1.1116 -1.9154 23 1 2.9716 -2.6875 0.0000 24 1 1.1573 -2.6019 0.0010 25 1 0.7150 -0.3558 2.4238 26 1 2.5806 -2.5189 3.1509 27 1 2.7630 -0.8194 3.6474 28 1 3.2705 -2.7170 6.7628 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307547517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -13.372295 kcal Electronic energy + Delta-G solvation = -9719.158681 eV Core-core repulsion = 7962.304657 eV Total energy + Delta-G solvation = -1756.854024 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.26401 -35.88919 -33.78866 -30.18613 -28.70346 -25.07578 -24.55311 -23.24115 -19.48648 -18.36122 -17.05590 -16.73732 -16.18514 -15.41310 -14.65636 -14.19867 -13.66660 -13.22812 -13.10458 -13.04320 -12.80368 -12.63916 -12.27002 -12.10078 -11.65122 -11.43015 -10.96709 -10.83889 -10.66443 -9.09034 -8.23585 -6.35887 1.40290 1.44622 1.52688 2.39525 3.09215 3.59345 3.69472 3.79897 4.08977 4.14457 4.61691 4.66653 4.79995 4.87006 5.03179 5.05909 5.10971 5.16457 5.24371 5.36917 5.54059 5.58343 5.68305 6.03427 6.48602 6.74855 6.90033 7.35684 8.88054 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.088985 B = 0.010342 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.583123 B = 2706.743489 C = 2887.756441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.128 4.128 6 C 0.038 3.962 7 H 0.042 0.958 8 N -0.671 5.671 9 C 0.209 3.791 10 C -0.539 4.539 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.936 5.936 14 Si 0.977 3.023 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.265 1.265 18 H 0.050 0.950 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.333 0.667 26 H -0.005 1.005 27 H -0.044 1.044 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 4.072 -10.561 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.127 4.127 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.072 4.072 7 H 0.060 0.940 8 N -0.302 5.302 9 C 0.081 3.919 10 C -0.577 4.577 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.801 3.199 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.189 1.189 18 H 0.069 0.931 19 H 0.093 0.907 20 H 0.073 0.927 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.152 0.848 26 H 0.013 0.987 27 H -0.027 1.027 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.653 3.381 -10.621 11.730 hybrid contribution 0.491 0.458 1.334 1.493 sum -3.161 3.839 -9.287 10.535 Atomic orbital electron populations 1.21419 0.92703 1.02116 1.01682 1.22628 0.97128 0.97750 0.95200 0.90417 1.22802 1.01542 0.95146 0.96184 1.22987 1.01403 0.96648 0.95640 1.23243 0.94743 0.98565 0.90694 0.94031 1.60758 1.24972 1.38795 1.05693 1.19209 0.92030 0.92720 0.87967 1.21554 0.94453 1.45895 0.95818 0.91647 1.26018 0.96918 0.94851 1.02073 1.70096 1.13759 1.47731 1.26051 0.85328 0.78269 0.79063 0.77273 1.19231 1.20718 1.18941 0.93125 0.90724 0.92743 0.89411 0.89413 0.93025 0.90295 0.84798 0.98707 1.02676 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 8.98 71.98 0.65 -2.49 15 2 C -0.11 -3.01 4.44 -10.21 -0.05 -3.06 15 3 H 0.08 1.99 8.14 -2.39 -0.02 1.98 15 4 C -0.12 -2.92 7.66 31.18 0.24 -2.68 15 5 C -0.13 -4.17 7.52 31.12 0.23 -3.94 15 6 C 0.04 1.42 4.00 45.44 0.18 1.61 15 7 H 0.04 1.70 7.89 -2.39 -0.02 1.68 15 8 N -0.67 -30.28 6.00 -492.87 -2.96 -33.23 15 9 C 0.21 11.78 5.30 85.56 0.45 12.23 15 10 C -0.54 -31.83 9.32 25.60 0.24 -31.59 15 11 H 0.07 3.72 7.81 -2.91 -0.02 3.69 15 12 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 13 N -0.94 -58.18 13.29 21.45 0.28 -57.89 15 14 Si 0.98 45.06 29.54 68.60 2.03 47.09 15 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 18 H 0.05 1.41 6.80 -2.39 -0.02 1.39 15 19 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.05 1.47 7.34 -2.38 -0.02 1.45 15 21 H 0.09 1.92 8.14 -2.39 -0.02 1.91 15 22 H 0.09 1.80 8.10 -2.39 -0.02 1.78 15 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.08 2.66 7.66 -2.39 -0.02 2.64 15 25 H 0.33 14.25 7.09 -89.69 -0.64 13.61 15 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 27 H -0.04 -2.70 8.13 -2.39 -0.02 -2.71 15 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -64.92 232.66 2.25 -62.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.48 Total: 10.85 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 2.41 Total: -29.49 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.67 Total: -91.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.92 2.25 -62.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307547517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.303 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds