Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.56348 * 2 1 4 4 C 1.53005 * 117.49883 * 145.68597 * 2 1 3 5 5 C 1.52996 * 117.50240 * 214.30827 * 2 1 3 6 6 C 1.52995 * 117.51930 * 145.02504 * 5 2 1 7 7 N 1.46904 * 117.49588 * 0.02562 * 5 2 1 8 8 C 1.46899 * 111.00029 * 179.97438 * 7 5 2 9 9 C 1.50703 * 109.47107 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47116 * 59.99536 * 13 11 9 15 15 H 1.48500 * 109.46585 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46730 * 299.99515 * 13 11 9 17 17 H 1.08996 * 109.47141 * 205.69298 * 1 2 3 18 18 H 1.08997 * 109.46838 * 325.68930 * 1 2 3 19 19 H 1.08995 * 109.47383 * 85.69066 * 1 2 3 20 20 H 1.08995 * 117.49772 * 0.02562 * 4 2 1 21 21 H 1.08998 * 117.51489 * 214.97310 * 4 2 1 22 22 H 1.08995 * 109.47546 * 299.88283 * 6 5 2 23 23 H 1.08997 * 109.47257 * 59.89121 * 6 5 2 24 24 H 1.09010 * 109.47062 * 179.88286 * 6 5 2 25 25 H 1.00908 * 110.99583 * 303.93501 * 7 5 2 26 26 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 27 27 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 28 28 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7649 6 6 3.5491 -0.7764 -1.4714 7 7 1.3939 -2.1146 -1.4436 8 6 2.2153 -3.1203 -2.1305 9 6 1.3182 -4.1206 -2.8130 10 1 0.2453 -4.0195 -2.7431 11 6 1.8673 -5.1653 -3.5258 12 7 3.1739 -5.2886 -3.6105 13 14 0.7553 -6.4048 -4.3724 14 1 -0.1013 -5.7054 -5.3634 15 1 1.5858 -7.4214 -5.0667 16 1 -0.1022 -7.0725 -3.3605 17 1 -0.3633 -0.9260 0.4455 18 1 -0.3633 0.8488 0.5793 19 1 -0.3634 0.0772 -1.0247 20 1 1.6113 -1.8586 1.2680 21 1 3.1716 -0.8754 1.2684 22 1 3.3701 0.0051 -2.2097 23 1 4.2748 -0.4244 -0.7383 24 1 3.9377 -1.6648 -1.9696 25 1 0.7554 -2.5506 -0.7952 26 1 2.8444 -2.6298 -2.8733 27 1 2.8445 -3.6338 -1.4035 28 1 3.5603 -6.0238 -4.1117 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575576246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 13.138092 kcal Electronic energy + Delta-G solvation = -9745.928713 eV Core-core repulsion = 7990.224266 eV Total energy + Delta-G solvation = -1755.704447 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.30546 -33.63700 -31.58814 -29.12038 -26.68226 -26.07367 -21.96734 -20.59914 -18.34046 -16.47003 -15.09138 -14.65056 -14.39283 -13.13648 -12.98857 -12.37663 -12.18484 -12.05809 -11.76334 -11.52692 -11.14665 -10.93382 -10.79640 -10.65654 -10.04959 -9.75710 -9.18825 -9.05222 -8.42639 -7.09863 -6.02598 -4.04483 3.34321 3.37967 3.41248 4.25479 4.44038 5.10068 5.15099 5.30073 5.33610 5.51691 5.69901 6.10437 6.12163 6.17313 6.24371 6.28867 6.39863 6.53717 6.72226 6.76185 7.29452 7.45172 7.79691 8.14432 8.40866 8.62589 9.04365 9.60111 11.08441 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072973 B = 0.011399 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.613356 B = 2455.812747 C = 2700.625982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.155 4.155 3 H 0.095 0.905 4 C -0.222 4.222 5 C 0.071 3.929 6 C -0.120 4.120 7 N -0.650 5.650 8 C 0.193 3.807 9 C -0.517 4.517 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 H 0.051 0.949 18 H 0.045 0.955 19 H 0.065 0.935 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.331 0.669 26 H 0.036 0.964 27 H -0.012 1.012 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 7.140 5.660 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 H 0.114 0.886 4 C -0.262 4.262 5 C -0.023 4.023 6 C -0.178 4.178 7 N -0.278 5.278 8 C 0.067 3.933 9 C -0.556 4.556 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.728 3.272 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 H 0.070 0.930 18 H 0.065 0.935 19 H 0.084 0.916 20 H 0.105 0.895 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.054 0.946 27 H 0.006 0.994 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.679 7.376 4.972 9.052 hybrid contribution -0.173 -1.214 0.395 1.289 sum -1.852 6.162 5.367 8.379 Atomic orbital electron populations 1.21172 0.93073 1.00605 1.01975 1.22523 0.95419 0.94053 1.05471 0.88643 1.23808 1.02247 1.02445 0.97670 1.21729 0.94678 0.96995 0.88877 1.21483 0.93717 1.02796 0.99790 1.60424 1.18766 1.18107 1.30507 1.19638 0.92608 0.88097 0.92993 1.21170 0.93482 1.09043 1.31859 0.92093 1.24974 0.95087 0.97898 0.96522 1.69949 1.09975 1.31826 1.41971 0.86535 0.80346 0.80693 0.79675 1.20145 1.21320 1.20288 0.92981 0.93544 0.91637 0.89469 0.89749 0.92279 0.93110 0.90133 0.85118 0.94585 0.99392 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.49 37.16 0.35 -1.27 15 2 C -0.16 -2.45 6.13 -90.62 -0.56 -3.01 15 3 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 4 C -0.22 -3.63 9.52 -26.73 -0.25 -3.88 15 5 C 0.07 1.33 2.89 -131.60 -0.38 0.95 15 6 C -0.12 -2.17 9.47 37.16 0.35 -1.82 15 7 N -0.65 -14.46 6.23 -101.22 -0.63 -15.09 15 8 C 0.19 5.11 4.45 -4.98 -0.02 5.09 15 9 C -0.52 -14.83 9.32 -34.44 -0.32 -15.15 15 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 12 N -0.90 -26.93 13.29 55.43 0.74 -26.19 15 13 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 17 H 0.05 0.76 7.69 -51.93 -0.40 0.36 15 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.09 1.42 7.99 -51.93 -0.42 1.01 15 21 H 0.08 1.26 8.05 -51.93 -0.42 0.85 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.05 0.78 7.90 -51.93 -0.41 0.37 15 24 H 0.08 1.65 5.61 -51.92 -0.29 1.36 15 25 H 0.33 7.12 8.08 -39.29 -0.32 6.80 15 26 H 0.04 1.01 6.35 -51.93 -0.33 0.68 15 27 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 15 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 235.61 15.07 3.55 3.55 Total: -1.00 -29.49 235.61 -6.53 -36.02 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.24 Total: 2.45 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.93 Total: -17.56 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.11 Total: -41.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.49 -6.53 -36.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575576246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.161 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds