Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54762 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29337 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67140 * 2 1 3 6 6 C 1.53003 * 117.49854 * 214.98029 * 5 2 1 7 7 N 1.46902 * 117.49789 * 359.97438 * 5 2 1 8 8 C 1.46903 * 110.99988 * 179.97438 * 7 5 2 9 9 C 1.50698 * 109.46885 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00139 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99784 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99820 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99879 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47276 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47070 * 119.99913 * 13 11 9 16 16 H 1.48503 * 109.46959 * 240.00003 * 13 11 9 17 17 H 1.09002 * 109.47153 * 274.32865 * 1 2 3 18 18 H 1.09001 * 109.46832 * 154.33056 * 1 2 3 19 19 H 1.09004 * 109.47261 * 34.33037 * 1 2 3 20 20 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 21 21 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 22 22 H 1.08999 * 109.47592 * 60.00009 * 6 5 2 23 23 H 1.09008 * 109.47095 * 179.97438 * 6 5 2 24 24 H 1.08996 * 109.47113 * 299.99440 * 6 5 2 25 25 H 1.00896 * 111.00213 * 303.95599 * 7 5 2 26 26 H 1.08999 * 109.47543 * 300.00824 * 8 7 5 27 27 H 1.09005 * 109.46607 * 60.00639 * 8 7 5 28 28 H 0.97004 * 119.99723 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 6 3.5490 -0.7753 1.4716 7 7 1.3938 -2.1141 1.4444 8 6 2.2153 -3.1202 2.1306 9 6 1.3182 -4.1195 2.8145 10 1 0.2453 -4.0176 2.7459 11 6 1.8674 -5.1639 3.5279 12 7 3.1740 -5.2876 3.6119 13 14 0.7555 -6.4030 4.3751 14 1 -0.6642 -6.0427 4.1303 15 1 1.0229 -7.7595 3.8334 16 1 1.0238 -6.3914 5.8356 17 1 -0.3633 0.0776 1.0247 18 1 -0.3633 -0.9263 -0.4452 19 1 -0.3634 0.8487 -0.5796 20 1 1.6113 -1.8591 -1.2673 21 1 3.1715 -0.8755 -1.2680 22 1 3.3702 0.0080 2.2082 23 1 3.9366 -1.6627 1.9724 24 1 4.2752 -0.4254 0.7380 25 1 0.7558 -1.6686 2.0866 26 1 2.8439 -3.6338 1.4032 27 1 2.8450 -2.6300 2.8731 28 1 3.5603 -6.0225 4.1135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575576248.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = 13.067561 kcal Electronic energy + Delta-G solvation = -9743.523320 eV Core-core repulsion = 7987.815814 eV Total energy + Delta-G solvation = -1755.707506 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.19097 -33.67581 -31.63987 -29.07415 -26.53014 -26.12790 -22.04182 -20.45633 -18.42099 -16.44399 -14.95884 -14.63129 -14.22688 -13.64805 -12.77896 -12.51328 -12.32900 -11.94475 -11.70801 -11.44784 -11.10475 -10.93177 -10.71212 -10.58953 -10.04068 -9.63186 -9.07505 -8.93624 -8.46271 -7.22956 -6.02019 -4.03561 3.31817 3.38944 3.44211 4.23867 4.44189 5.02151 5.17504 5.33806 5.39077 5.67541 5.71922 6.07979 6.11549 6.22178 6.25140 6.33426 6.38581 6.52828 6.73826 6.77777 7.33839 7.48262 7.82119 8.16881 8.43366 8.66364 9.06217 9.61156 11.09128 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072917 B = 0.011395 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.904816 B = 2456.586133 C = 2700.009853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.159 4.159 3 H 0.093 0.907 4 C -0.163 4.163 5 C 0.049 3.951 6 C -0.147 4.147 7 N -0.652 5.652 8 C 0.194 3.806 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 H 0.054 0.946 18 H 0.062 0.938 19 H 0.047 0.953 20 H 0.095 0.905 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.329 0.671 26 H 0.028 0.972 27 H -0.005 1.005 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 8.226 -4.630 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 H 0.111 0.889 4 C -0.201 4.201 5 C -0.044 4.044 6 C -0.206 4.206 7 N -0.282 5.282 8 C 0.067 3.933 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 H 0.073 0.927 18 H 0.081 0.919 19 H 0.066 0.934 20 H 0.113 0.887 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.148 0.852 26 H 0.046 0.954 27 H 0.013 0.987 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.953 7.704 -5.102 9.444 hybrid contribution -0.051 -0.255 1.217 1.245 sum -2.005 7.449 -3.885 8.637 Atomic orbital electron populations 1.21161 0.92939 1.01378 1.01345 1.22483 0.95478 0.93596 1.06233 0.88891 1.23218 1.01424 1.00644 0.94850 1.21598 0.94389 0.95454 0.92979 1.21867 0.96160 1.02386 1.00192 1.60571 1.19003 1.12898 1.35706 1.19621 0.92583 0.88894 0.92179 1.21254 0.93555 1.09868 1.30619 0.91999 1.24983 0.95072 0.97946 0.96572 1.69974 1.09970 1.31737 1.42075 0.86432 0.80839 0.81074 0.79010 1.19675 1.20997 1.21102 0.92675 0.91874 0.93414 0.88656 0.89862 0.93099 0.90115 0.93090 0.85243 0.95368 0.98744 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.49 37.16 0.35 -1.24 15 2 C -0.16 -2.47 6.13 -90.62 -0.56 -3.02 15 3 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.16 -2.74 9.75 -26.73 -0.26 -3.00 15 5 C 0.05 0.91 2.77 -131.60 -0.36 0.55 15 6 C -0.15 -2.65 9.48 37.16 0.35 -2.30 15 7 N -0.65 -14.48 6.16 -101.22 -0.62 -15.10 15 8 C 0.19 5.15 4.46 -4.98 -0.02 5.13 15 9 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 15 10 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -27.07 13.29 55.43 0.74 -26.33 15 13 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 15 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 17 H 0.05 0.79 7.93 -51.93 -0.41 0.38 15 18 H 0.06 0.97 7.90 -51.93 -0.41 0.56 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.10 1.67 8.05 -51.93 -0.42 1.25 15 21 H 0.08 1.25 8.05 -51.93 -0.42 0.83 15 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.08 1.68 5.60 -51.92 -0.29 1.39 15 24 H 0.05 0.80 7.90 -51.93 -0.41 0.39 15 25 H 0.33 7.05 8.37 -39.29 -0.33 6.72 15 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 27 H -0.01 -0.14 6.35 -51.93 -0.33 -0.47 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 236.00 15.07 3.56 3.56 Total: -1.00 -29.69 236.00 -6.52 -36.21 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.25 Total: 2.28 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.92 Total: -17.49 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.11 Total: -41.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.69 -6.52 -36.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575576248.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.279 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds