Wall clock time and date at job start Mon Mar 30 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54762 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29337 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67140 * 2 1 3 6 6 C 1.53003 * 117.49854 * 214.98029 * 5 2 1 7 7 N 1.46902 * 117.49789 * 359.97438 * 5 2 1 8 8 C 1.46903 * 110.99988 * 179.97438 * 7 5 2 9 9 C 1.50698 * 109.46885 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00139 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99784 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99820 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99879 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47276 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47070 * 119.99913 * 13 11 9 16 16 H 1.48503 * 109.46959 * 240.00003 * 13 11 9 17 17 H 1.09002 * 109.47153 * 274.32865 * 1 2 3 18 18 H 1.09001 * 109.46832 * 154.33056 * 1 2 3 19 19 H 1.09004 * 109.47261 * 34.33037 * 1 2 3 20 20 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 21 21 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 22 22 H 1.08999 * 109.47592 * 60.00009 * 6 5 2 23 23 H 1.09008 * 109.47095 * 179.97438 * 6 5 2 24 24 H 1.08996 * 109.47113 * 299.99440 * 6 5 2 25 25 H 1.00896 * 111.00213 * 303.95599 * 7 5 2 26 26 H 1.08999 * 109.47543 * 300.00824 * 8 7 5 27 27 H 1.09005 * 109.46607 * 60.00639 * 8 7 5 28 28 H 0.97004 * 119.99723 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 6 3.5490 -0.7753 1.4716 7 7 1.3938 -2.1141 1.4444 8 6 2.2153 -3.1202 2.1306 9 6 1.3182 -4.1195 2.8145 10 1 0.2453 -4.0176 2.7459 11 6 1.8674 -5.1639 3.5279 12 7 3.1740 -5.2876 3.6119 13 14 0.7555 -6.4030 4.3751 14 1 -0.6642 -6.0427 4.1303 15 1 1.0229 -7.7595 3.8334 16 1 1.0238 -6.3914 5.8356 17 1 -0.3633 0.0776 1.0247 18 1 -0.3633 -0.9263 -0.4452 19 1 -0.3634 0.8487 -0.5796 20 1 1.6113 -1.8591 -1.2673 21 1 3.1715 -0.8755 -1.2680 22 1 3.3702 0.0080 2.2082 23 1 3.9366 -1.6627 1.9724 24 1 4.2752 -0.4254 0.7380 25 1 0.7558 -1.6686 2.0866 26 1 2.8439 -3.6338 1.4032 27 1 2.8450 -2.6300 2.8731 28 1 3.5603 -6.0225 4.1135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575576248.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:29 Heat of formation + Delta-G solvation = -6.710253 kcal Electronic energy + Delta-G solvation = -9744.380951 eV Core-core repulsion = 7987.815814 eV Total energy + Delta-G solvation = -1756.565136 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.64763 -35.66754 -33.59393 -30.48212 -28.22289 -27.85554 -24.08898 -21.78156 -19.99843 -18.54857 -16.75280 -16.28039 -15.87902 -15.37028 -14.43030 -14.04071 -13.99658 -13.58395 -13.06567 -13.01960 -12.90186 -12.61604 -12.44709 -12.14884 -12.05135 -11.33808 -10.90500 -10.66749 -10.33987 -9.03002 -8.23076 -6.34276 1.40224 1.41071 1.55041 2.39291 2.88939 3.10174 3.44966 3.85246 4.07606 4.25990 4.51792 4.66813 4.78466 4.89245 4.97638 5.02427 5.08924 5.11385 5.22069 5.28493 5.44014 5.57549 5.63697 6.05154 6.48275 6.76376 6.90721 7.36719 8.88648 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072917 B = 0.011395 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.904816 B = 2456.586133 C = 2700.009853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 H 0.121 0.879 4 C -0.163 4.163 5 C 0.008 3.992 6 C -0.139 4.139 7 N -0.652 5.652 8 C 0.214 3.786 9 C -0.538 4.538 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.276 1.276 17 H 0.053 0.947 18 H 0.047 0.953 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.332 0.668 26 H -0.007 1.007 27 H -0.026 1.026 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 9.110 -4.940 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.147 4.147 3 H 0.139 0.861 4 C -0.201 4.201 5 C -0.085 4.085 6 C -0.198 4.198 7 N -0.282 5.282 8 C 0.086 3.914 9 C -0.577 4.577 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.202 1.202 17 H 0.072 0.928 18 H 0.066 0.934 19 H 0.096 0.904 20 H 0.101 0.899 21 H 0.122 0.878 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.011 0.989 27 H -0.008 1.008 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.951 8.610 -5.427 10.596 hybrid contribution 0.281 -0.474 1.260 1.375 sum -2.670 8.135 -4.167 9.523 Atomic orbital electron populations 1.21207 0.92103 1.01935 1.01727 1.22635 0.96106 0.93659 1.02254 0.86115 1.23297 1.02510 1.01148 0.93162 1.21822 0.95259 0.97405 0.93971 1.21760 0.96308 1.00946 1.00776 1.60403 1.19087 1.13779 1.34925 1.19181 0.92016 0.89448 0.90727 1.21626 0.93844 1.10900 1.31304 0.91964 1.25957 0.96629 1.00000 0.97107 1.70102 1.11929 1.32624 1.42764 0.85267 0.78924 0.78074 0.77910 1.18714 1.20373 1.20153 0.92770 0.93418 0.90393 0.89896 0.87821 0.91997 0.94024 0.90587 0.84960 0.98882 1.00807 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.93 9.49 71.98 0.68 -2.25 15 2 C -0.13 -3.60 6.13 -10.80 -0.07 -3.67 15 3 H 0.12 2.81 8.14 -2.38 -0.02 2.79 15 4 C -0.16 -5.20 9.75 30.59 0.30 -4.90 15 5 C 0.01 0.28 2.77 3.52 0.01 0.29 15 6 C -0.14 -4.95 9.48 71.98 0.68 -4.27 15 7 N -0.65 -29.35 6.16 -474.15 -2.92 -32.27 15 8 C 0.21 11.81 4.46 85.56 0.38 12.19 15 9 C -0.54 -31.55 9.32 25.60 0.24 -31.31 15 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 15 11 C 0.00 0.07 5.46 84.66 0.46 0.53 15 12 N -0.93 -57.38 13.29 21.45 0.28 -57.09 15 13 Si 0.97 44.99 29.54 68.60 2.03 47.02 15 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 17 H 0.05 1.43 7.93 -2.39 -0.02 1.41 15 18 H 0.05 1.39 7.90 -2.39 -0.02 1.37 15 19 H 0.08 1.58 8.14 -2.38 -0.02 1.56 15 20 H 0.08 2.84 8.05 -2.39 -0.02 2.82 15 21 H 0.10 2.85 8.05 -2.39 -0.02 2.83 15 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.04 1.79 5.60 -2.38 -0.01 1.77 15 24 H 0.08 2.26 7.90 -2.39 -0.02 2.24 15 25 H 0.33 14.31 8.37 -89.70 -0.75 13.56 15 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 15 27 H -0.03 -1.49 6.35 -2.38 -0.02 -1.51 15 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 Total: -1.00 -64.23 236.00 2.46 -61.77 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.38 Total: 13.96 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 2.69 Total: -33.38 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.64 Total: -89.36 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.23 2.46 -61.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575576248.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.061 kcal (2) G-P(sol) polarization free energy of solvation -64.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds