Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.55563 * 2 1 4 4 C 1.53077 * 117.51428 * 145.72270 * 2 1 3 5 5 C 1.53005 * 59.98546 * 107.47427 * 4 2 1 6 6 C 1.53002 * 117.49901 * 252.50161 * 5 4 2 7 7 N 1.46898 * 117.49640 * 107.49941 * 5 4 2 8 8 C 1.46903 * 110.99849 * 111.25557 * 7 5 4 9 9 C 1.50694 * 109.47066 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 H 1.09000 * 109.47514 * 205.67333 * 1 2 3 18 18 H 1.09004 * 109.46916 * 325.66881 * 1 2 3 19 19 H 1.08993 * 109.47409 * 85.66681 * 1 2 3 20 20 H 1.09002 * 117.49357 * 359.97438 * 4 2 1 21 21 H 1.08997 * 117.51655 * 214.95132 * 4 2 1 22 22 H 1.08998 * 109.46444 * 248.74616 * 6 5 4 23 23 H 1.08991 * 109.47209 * 8.74417 * 6 5 4 24 24 H 1.09000 * 109.46914 * 128.74622 * 6 5 4 25 25 H 1.00899 * 111.00040 * 235.20976 * 7 5 4 26 26 H 1.08998 * 109.46809 * 60.00017 * 8 7 5 27 27 H 1.09002 * 109.47056 * 299.99758 * 8 7 5 28 28 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2371 -1.1218 0.7646 5 6 2.2364 -1.1208 -0.7654 6 6 1.3587 -2.1557 -1.4722 7 7 3.4963 -0.7891 -1.4440 8 6 4.0505 -1.9645 -2.1292 9 6 5.3392 -1.5863 -2.8126 10 1 5.7098 -0.5742 -2.7446 11 6 6.0457 -2.5328 -3.5241 12 7 5.5947 -3.7654 -3.6066 13 14 7.6393 -2.0621 -4.3778 14 1 7.9229 -0.6242 -4.1386 15 1 8.7521 -2.8825 -3.8358 16 1 7.5097 -2.3057 -5.8369 17 1 -0.3634 -0.9262 0.4452 18 1 -0.3633 0.8487 0.5796 19 1 -0.3634 0.0776 -1.0246 20 1 1.6120 -1.8595 1.2679 21 1 3.1725 -0.8765 1.2676 22 1 1.9921 -2.8891 -1.9711 23 1 0.7283 -2.6589 -0.7391 24 1 0.7305 -1.6563 -2.2098 25 1 3.3696 -0.0221 -2.0872 26 1 3.3371 -2.3220 -2.8717 27 1 4.2427 -2.7525 -1.4010 28 1 6.0920 -4.4313 -4.1069 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575576250.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -7.149743 kcal Electronic energy + Delta-G solvation = -9698.368504 eV Core-core repulsion = 7941.784310 eV Total energy + Delta-G solvation = -1756.584194 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.68329 -35.75049 -33.71840 -29.69120 -28.87679 -27.92551 -24.12379 -21.71502 -19.86852 -18.63178 -16.84238 -16.68503 -15.50253 -15.15242 -14.47958 -14.23355 -14.01214 -13.69440 -13.24332 -12.96242 -12.74280 -12.64247 -12.44336 -12.22632 -12.01004 -11.34327 -10.87958 -10.67455 -10.37602 -9.07056 -8.23535 -6.34946 1.40113 1.40977 1.55019 2.39040 2.87843 3.09630 3.40495 3.91688 4.02201 4.24740 4.46897 4.62754 4.78813 4.90569 4.98012 5.00619 5.06495 5.08677 5.22439 5.24696 5.43293 5.52262 5.63227 6.04169 6.46499 6.74731 6.89072 7.36042 8.88188 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.098290 B = 0.010218 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.802291 B = 2739.659502 C = 2856.714272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.010 3.990 6 C -0.135 4.135 7 N -0.659 5.659 8 C 0.214 3.786 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.975 3.025 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.276 1.276 17 H 0.061 0.939 18 H 0.077 0.923 19 H 0.059 0.941 20 H 0.105 0.895 21 H 0.082 0.918 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.333 0.667 26 H -0.024 1.024 27 H -0.007 1.007 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 5.755 4.894 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 H 0.121 0.879 4 C -0.201 4.201 5 C -0.082 4.082 6 C -0.194 4.194 7 N -0.289 5.289 8 C 0.087 3.913 9 C -0.578 4.578 10 H 0.080 0.920 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.201 1.201 17 H 0.080 0.920 18 H 0.095 0.905 19 H 0.078 0.922 20 H 0.123 0.877 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.151 0.849 26 H -0.007 1.007 27 H 0.011 0.989 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.773 5.506 5.378 10.939 hybrid contribution 0.435 -0.340 -1.241 1.358 sum -7.338 5.166 4.138 9.882 Atomic orbital electron populations 1.21353 0.90874 1.02784 1.02167 1.22600 0.96065 0.93818 1.02355 0.87905 1.23317 1.01946 1.01592 0.93202 1.21842 0.91747 1.00729 0.93913 1.21704 0.98726 0.98245 1.00707 1.60447 1.24011 1.09341 1.35075 1.19179 0.93068 0.88340 0.90756 1.21625 1.07750 0.96951 1.31495 0.92000 1.25956 1.01935 0.94670 0.97060 1.70101 1.40895 1.03570 1.42801 0.85260 0.78275 0.78671 0.77925 1.18736 1.20343 1.20109 0.91974 0.90459 0.92189 0.87719 0.89986 0.94165 0.90603 0.91933 0.84928 1.00673 0.98859 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.21 71.98 0.66 -1.80 15 2 C -0.13 -3.71 6.34 -10.77 -0.07 -3.77 15 3 H 0.10 2.93 8.14 -2.39 -0.02 2.91 15 4 C -0.16 -5.23 9.75 30.62 0.30 -4.93 15 5 C 0.01 0.36 2.80 3.53 0.01 0.37 15 6 C -0.14 -4.80 8.51 71.98 0.61 -4.19 15 7 N -0.66 -30.12 6.69 -474.13 -3.17 -33.30 15 8 C 0.21 11.89 4.46 85.55 0.38 12.27 15 9 C -0.54 -31.77 9.32 25.60 0.24 -31.53 15 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 15 11 C 0.00 0.11 5.46 84.66 0.46 0.58 15 12 N -0.93 -57.36 13.29 21.45 0.28 -57.07 15 13 Si 0.97 45.04 29.54 68.60 2.03 47.06 15 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 15 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 17 H 0.06 1.25 7.77 -2.39 -0.02 1.23 15 18 H 0.08 1.35 8.14 -2.38 -0.02 1.33 15 19 H 0.06 1.27 8.02 -2.39 -0.02 1.25 15 20 H 0.10 2.91 7.96 -2.39 -0.02 2.89 15 21 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 22 H 0.04 1.73 5.61 -2.39 -0.01 1.72 15 23 H 0.08 2.26 7.77 -2.39 -0.02 2.24 15 24 H 0.06 2.02 8.02 -2.39 -0.02 2.00 15 25 H 0.33 14.49 8.81 -89.69 -0.79 13.70 15 26 H -0.02 -1.42 6.35 -2.39 -0.02 -1.43 15 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 28 H 0.27 15.20 8.31 -92.71 -0.77 14.42 15 Total: -1.00 -64.58 235.68 2.07 -62.51 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.34 Total: 13.81 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 2.60 Total: -33.01 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -2.89 Total: -90.37 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.58 2.07 -62.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575576250.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.358 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds