Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56029 * 2 1 4 4 C 1.53003 * 117.49604 * 145.68431 * 2 1 3 5 5 C 1.52999 * 117.49913 * 214.30925 * 2 1 3 6 6 C 1.52993 * 117.52011 * 145.03037 * 5 2 1 7 7 C 1.53000 * 117.49944 * 359.97438 * 5 2 1 8 8 N 1.46491 * 109.47390 * 225.99626 * 7 5 2 9 9 C 1.36940 * 120.00019 * 174.21431 * 8 7 5 10 10 H 1.08005 * 119.99902 * 359.73253 * 9 8 7 11 11 C 1.38810 * 120.00211 * 179.72565 * 9 8 7 12 12 N 1.31621 * 120.00151 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99848 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46981 * 89.99925 * 13 11 9 15 15 H 1.48503 * 109.47039 * 209.99753 * 13 11 9 16 16 H 1.48494 * 109.47109 * 329.99933 * 13 11 9 17 17 H 1.09005 * 109.47090 * 205.68839 * 1 2 3 18 18 H 1.08998 * 109.47368 * 325.68782 * 1 2 3 19 19 H 1.08999 * 109.47299 * 85.69685 * 1 2 3 20 20 H 1.08994 * 117.50156 * 0.02562 * 4 2 1 21 21 H 1.09002 * 117.51065 * 214.96727 * 4 2 1 22 22 H 1.09004 * 109.47005 * 271.10473 * 6 5 2 23 23 H 1.09008 * 109.46849 * 31.09932 * 6 5 2 24 24 H 1.08996 * 109.47750 * 151.10226 * 6 5 2 25 25 H 1.09000 * 109.46637 * 105.99744 * 7 5 2 26 26 H 1.09005 * 109.47170 * 346.00291 * 7 5 2 27 27 H 0.97001 * 120.00544 * 353.94090 * 8 7 5 28 28 H 0.97003 * 119.99556 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 6 3.5491 -0.7766 -1.4714 7 6 1.3589 -2.1566 -1.4709 8 7 1.8651 -3.5014 -1.1859 9 6 1.1693 -4.6000 -1.6148 10 1 0.2450 -4.4751 -2.1595 11 6 1.6518 -5.8743 -1.3498 12 7 0.9833 -6.9303 -1.7625 13 14 3.2501 -6.0904 -0.4072 14 1 2.9605 -6.1670 1.0472 15 1 3.9179 -7.3422 -0.8456 16 1 4.1423 -4.9337 -0.6740 17 1 -0.3633 -0.9261 0.4455 18 1 -0.3634 0.8488 0.5793 19 1 -0.3634 0.0771 -1.0247 20 1 1.6112 -1.8586 1.2681 21 1 3.1717 -0.8754 1.2683 22 1 3.3370 -0.4261 -2.4815 23 1 4.0659 0.0064 -0.9162 24 1 4.1796 -1.6643 -1.5197 25 1 1.3821 -1.9799 -2.5462 26 1 0.3337 -2.0702 -1.1106 27 1 2.6952 -3.6137 -0.6968 28 1 1.3204 -7.8207 -1.5769 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575579399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = 24.655424 kcal Electronic energy + Delta-G solvation = -9838.809199 eV Core-core repulsion = 8083.604181 eV Total energy + Delta-G solvation = -1755.205018 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.49639 -34.06801 -31.14165 -29.69113 -26.87028 -25.95658 -22.13990 -20.66274 -18.66936 -17.14538 -15.12315 -14.50038 -14.27810 -13.50499 -12.96771 -12.76759 -12.45344 -12.27481 -11.88082 -11.84229 -11.29658 -11.10325 -10.84686 -10.41906 -10.06404 -9.58542 -9.50619 -9.17038 -8.82514 -7.14856 -5.72256 -3.06198 3.41107 3.44971 3.48281 4.01269 4.63935 4.96792 5.10684 5.15088 5.47345 5.54282 5.61124 5.80408 5.89591 6.01682 6.08520 6.12747 6.20622 6.28728 6.43263 6.47513 6.59040 6.75707 6.87585 8.05515 8.47708 9.27980 10.00703 10.22503 11.46479 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.013815 C = 0.012701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.892842 B = 2026.278359 C = 2204.011764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.148 4.148 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.132 4.132 6 C -0.110 4.110 7 C 0.190 3.810 8 N -0.753 5.753 9 C -0.241 4.241 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.884 3.116 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.277 1.277 17 H 0.061 0.939 18 H 0.052 0.948 19 H 0.059 0.941 20 H 0.097 0.903 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.037 0.963 27 H 0.362 0.638 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 13.121 3.644 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 H 0.115 0.885 4 C -0.206 4.206 5 C -0.133 4.133 6 C -0.167 4.167 7 C 0.063 3.937 8 N -0.398 5.398 9 C -0.371 4.371 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.585 5.585 13 Si 0.715 3.285 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.203 1.203 17 H 0.080 0.920 18 H 0.071 0.929 19 H 0.078 0.922 20 H 0.116 0.884 21 H 0.104 0.896 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.194 0.806 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.883 12.977 3.527 13.753 hybrid contribution 1.200 -0.334 0.672 1.415 sum 4.083 12.643 4.199 13.934 Atomic orbital electron populations 1.21356 0.93071 1.01676 1.01732 1.22389 0.95238 0.93780 1.05294 0.88505 1.23112 1.02044 1.01143 0.94309 1.21901 0.98231 0.99580 0.93562 1.21266 0.94945 1.00790 0.99696 1.20190 0.94529 0.82986 0.96032 1.42684 1.27123 1.01272 1.68712 1.19088 1.04725 0.83886 1.29355 0.89300 1.24657 0.98423 0.95296 1.00931 1.69708 1.39904 0.97372 1.51505 0.86539 0.84794 0.76984 0.80232 1.21128 1.21786 1.20308 0.92009 0.92879 0.92179 0.88430 0.89586 0.92347 0.93330 0.92103 0.95789 0.94554 0.80585 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.71 37.16 0.32 -1.29 15 2 C -0.15 -2.08 6.11 -90.62 -0.55 -2.63 15 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 4 C -0.17 -2.63 9.57 -26.72 -0.26 -2.89 15 5 C -0.13 -2.20 2.11 -154.51 -0.33 -2.53 15 6 C -0.11 -1.64 9.72 37.15 0.36 -1.28 15 7 C 0.19 3.89 5.96 -4.05 -0.02 3.87 15 8 N -0.75 -18.69 5.36 -59.91 -0.32 -19.01 15 9 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 15 10 H 0.09 2.77 8.06 -52.48 -0.42 2.34 15 11 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 15 12 N -0.94 -30.06 13.97 55.49 0.78 -29.28 15 13 Si 0.88 22.76 27.74 -169.99 -4.71 18.04 15 14 H -0.28 -7.25 7.11 56.52 0.40 -6.85 15 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 15 16 H -0.28 -6.76 6.52 56.52 0.37 -6.39 15 17 H 0.06 0.90 7.33 -51.93 -0.38 0.52 15 18 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.06 0.79 8.09 -51.93 -0.42 0.37 15 20 H 0.10 1.66 8.05 -51.93 -0.42 1.24 15 21 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.05 0.62 8.11 -51.92 -0.42 0.20 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.02 0.51 8.13 -51.93 -0.42 0.08 15 26 H 0.04 0.75 6.07 -51.93 -0.32 0.44 15 27 H 0.36 8.83 5.54 -40.82 -0.23 8.60 15 28 H 0.26 7.89 8.31 -40.82 -0.34 7.55 15 LS Contribution 234.35 15.07 3.53 3.53 Total: -1.00 -31.29 234.35 -5.77 -37.06 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.31 Total: 3.63 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.73 Total: -13.97 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.45 Total: -48.29 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.29 -5.77 -37.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.713 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds