Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56029 * 2 1 4 4 C 1.53003 * 117.49604 * 145.68431 * 2 1 3 5 5 C 1.52999 * 117.49913 * 214.30925 * 2 1 3 6 6 C 1.52993 * 117.52011 * 145.03037 * 5 2 1 7 7 C 1.53000 * 117.49944 * 359.97438 * 5 2 1 8 8 N 1.46491 * 109.47390 * 225.99626 * 7 5 2 9 9 C 1.36940 * 120.00019 * 174.21431 * 8 7 5 10 10 H 1.08005 * 119.99902 * 359.73253 * 9 8 7 11 11 C 1.38810 * 120.00211 * 179.72565 * 9 8 7 12 12 N 1.31621 * 120.00151 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99848 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46981 * 89.99925 * 13 11 9 15 15 H 1.48503 * 109.47039 * 209.99753 * 13 11 9 16 16 H 1.48494 * 109.47109 * 329.99933 * 13 11 9 17 17 H 1.09005 * 109.47090 * 205.68839 * 1 2 3 18 18 H 1.08998 * 109.47368 * 325.68782 * 1 2 3 19 19 H 1.08999 * 109.47299 * 85.69685 * 1 2 3 20 20 H 1.08994 * 117.50156 * 0.02562 * 4 2 1 21 21 H 1.09002 * 117.51065 * 214.96727 * 4 2 1 22 22 H 1.09004 * 109.47005 * 271.10473 * 6 5 2 23 23 H 1.09008 * 109.46849 * 31.09932 * 6 5 2 24 24 H 1.08996 * 109.47750 * 151.10226 * 6 5 2 25 25 H 1.09000 * 109.46637 * 105.99744 * 7 5 2 26 26 H 1.09005 * 109.47170 * 346.00291 * 7 5 2 27 27 H 0.97001 * 120.00544 * 353.94090 * 8 7 5 28 28 H 0.97003 * 119.99556 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 6 3.5491 -0.7766 -1.4714 7 6 1.3589 -2.1566 -1.4709 8 7 1.8651 -3.5014 -1.1859 9 6 1.1693 -4.6000 -1.6148 10 1 0.2450 -4.4751 -2.1595 11 6 1.6518 -5.8743 -1.3498 12 7 0.9833 -6.9303 -1.7625 13 14 3.2501 -6.0904 -0.4072 14 1 2.9605 -6.1670 1.0472 15 1 3.9179 -7.3422 -0.8456 16 1 4.1423 -4.9337 -0.6740 17 1 -0.3633 -0.9261 0.4455 18 1 -0.3634 0.8488 0.5793 19 1 -0.3634 0.0771 -1.0247 20 1 1.6112 -1.8586 1.2681 21 1 3.1717 -0.8754 1.2683 22 1 3.3370 -0.4261 -2.4815 23 1 4.0659 0.0064 -0.9162 24 1 4.1796 -1.6643 -1.5197 25 1 1.3821 -1.9799 -2.5462 26 1 0.3337 -2.0702 -1.1106 27 1 2.6952 -3.6137 -0.6968 28 1 1.3204 -7.8207 -1.5769 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575579399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = 4.320799 kcal Electronic energy + Delta-G solvation = -9839.690974 eV Core-core repulsion = 8083.604181 eV Total energy + Delta-G solvation = -1756.086794 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.79464 -36.07653 -33.28164 -30.91179 -28.20880 -27.61283 -24.18438 -21.85440 -20.44358 -18.93683 -16.68022 -16.24754 -15.91448 -15.19082 -14.59272 -14.26838 -14.12914 -13.58051 -13.32893 -13.04265 -12.93821 -12.84149 -12.25545 -12.17881 -11.87278 -11.66357 -11.04713 -10.68852 -10.40783 -9.29215 -8.04842 -5.37392 1.35467 1.38869 1.46741 2.46598 2.77947 3.26100 3.75109 3.79695 3.88558 4.15508 4.22190 4.49671 4.72839 4.87141 4.95105 4.97601 5.00631 5.06297 5.11329 5.18443 5.27048 5.44536 5.52684 5.73079 6.19917 7.06399 7.83691 8.04755 9.17005 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.013815 C = 0.012701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.892842 B = 2026.278359 C = 2204.011764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 H 0.128 0.872 4 C -0.173 4.173 5 C -0.152 4.152 6 C -0.106 4.106 7 C 0.186 3.814 8 N -0.753 5.753 9 C -0.236 4.236 10 H 0.054 0.946 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.956 3.044 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.254 1.254 17 H 0.040 0.960 18 H 0.080 0.920 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.108 0.892 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.017 0.983 26 H 0.031 0.969 27 H 0.366 0.634 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 15.191 4.787 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 H 0.145 0.855 4 C -0.210 4.210 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.060 3.940 8 N -0.399 5.399 9 C -0.367 4.367 10 H 0.072 0.928 11 C -0.256 4.256 12 N -0.635 5.635 13 Si 0.783 3.217 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.178 1.178 17 H 0.059 0.941 18 H 0.098 0.902 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.126 0.874 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.199 0.801 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.516 15.100 4.671 16.439 hybrid contribution 0.567 -0.930 0.269 1.122 sum 5.083 14.170 4.940 15.844 Atomic orbital electron populations 1.21400 0.92950 1.01803 1.02020 1.22534 0.95368 0.94174 1.02032 0.85453 1.23155 1.03030 1.01584 0.93231 1.21803 0.99079 1.00262 0.94126 1.21245 0.93780 1.00945 1.00287 1.20298 0.95276 0.82273 0.96177 1.42680 1.26937 1.01797 1.68452 1.19071 1.03777 0.85614 1.28247 0.92778 1.25513 1.02616 0.94830 1.02607 1.69890 1.42190 0.97928 1.53495 0.85384 0.80194 0.77445 0.78660 1.20302 1.21914 1.17845 0.94092 0.90159 0.92263 0.90528 0.87398 0.91946 0.90415 0.93797 0.96464 0.95122 0.80103 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.71 71.98 0.63 -2.40 15 2 C -0.12 -3.01 6.11 -10.79 -0.07 -3.08 15 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 15 4 C -0.17 -4.91 9.57 30.60 0.29 -4.61 15 5 C -0.15 -4.71 2.11 -52.18 -0.11 -4.82 15 6 C -0.11 -2.83 9.72 71.98 0.70 -2.13 15 7 C 0.19 7.56 5.96 86.38 0.52 8.08 15 8 N -0.75 -37.22 5.36 -343.46 -1.84 -39.07 15 9 C -0.24 -14.09 10.47 84.03 0.88 -13.21 15 10 H 0.05 3.53 8.06 -2.91 -0.02 3.50 15 11 C -0.06 -3.92 5.50 84.86 0.47 -3.45 15 12 N -0.98 -64.69 13.97 21.65 0.30 -64.39 15 13 Si 0.96 46.91 27.74 68.60 1.90 48.81 15 14 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 15 H -0.29 -14.35 7.11 99.48 0.71 -13.65 15 16 H -0.25 -11.36 6.52 99.48 0.65 -10.71 15 17 H 0.04 1.15 7.33 -2.38 -0.02 1.14 15 18 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.06 1.45 8.09 -2.39 -0.02 1.43 15 20 H 0.08 2.50 8.05 -2.39 -0.02 2.48 15 21 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.08 1.63 8.11 -2.38 -0.02 1.61 15 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.02 0.73 8.13 -2.39 -0.02 0.71 15 26 H 0.03 1.28 6.07 -2.38 -0.01 1.27 15 27 H 0.37 17.33 5.54 -92.71 -0.51 16.81 15 28 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 Total: -1.00 -67.71 234.35 4.22 -63.49 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.55 Total: 16.79 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.31 Total: -25.64 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -1.54 Total: -103.45 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -67.71 4.22 -63.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.812 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds