Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48501 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47483 * 300.00499 * 3 2 1 6 6 H 1.48500 * 109.47125 * 60.00648 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47390 * 300.00241 * 9 7 2 11 11 C 1.52997 * 109.47242 * 60.00271 * 9 7 2 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46626 * 299.99539 * 12 11 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 11 15 15 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47336 * 60.00024 * 14 13 12 17 17 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 18 18 H 0.96996 * 119.99725 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47502 * 60.00161 * 11 9 7 20 20 H 1.09001 * 109.47289 * 299.99957 * 11 9 7 21 21 H 1.08993 * 109.46955 * 60.00011 * 12 11 9 22 22 H 1.09000 * 109.47050 * 179.97438 * 12 11 9 23 23 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 24 24 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 25 25 H 1.00893 * 111.00767 * 59.99682 * 16 14 13 26 26 H 1.00900 * 111.00299 * 183.95813 * 16 14 13 27 27 H 1.08996 * 109.47452 * 300.00000 * 17 14 13 28 28 H 1.09000 * 109.47054 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 -0.3946 -3.9047 -1.2491 13 6 0.5993 -5.0679 -1.2495 14 6 1.4793 -4.9871 -0.0005 15 1 2.1871 -5.8161 -0.0005 16 7 0.6352 -5.0647 1.1992 17 6 2.2448 -3.6625 -0.0009 18 1 -0.4849 0.8400 0.0004 19 1 0.9973 -2.5221 -2.1397 20 1 -0.3373 -1.7514 -1.2491 21 1 -1.0209 -3.9621 -0.3590 22 1 -1.0219 -3.9620 -2.1387 23 1 0.0539 -6.0117 -1.2497 24 1 1.2256 -5.0105 -2.1396 25 1 0.1189 -5.9312 1.2228 26 1 1.1857 -4.9489 2.0368 27 1 2.8712 -3.6050 -0.8910 28 1 2.8721 -3.6051 0.8887 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584600403.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = -44.933920 kcal Electronic energy + Delta-G solvation = -10194.082932 eV Core-core repulsion = 8435.860293 eV Total energy + Delta-G solvation = -1758.222639 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.49406 -35.21961 -33.18158 -31.53242 -28.95178 -26.74723 -22.83514 -22.39555 -19.71820 -18.37280 -16.75115 -16.45075 -15.84485 -15.28224 -14.69788 -14.27073 -13.94484 -13.21480 -12.95760 -12.82829 -12.48285 -12.43961 -11.97475 -11.72851 -11.53848 -11.17686 -10.66916 -10.45277 -10.26376 -9.24060 -8.01101 -6.15381 1.39906 1.41233 1.52634 2.46147 3.23938 3.79996 4.10922 4.19066 4.37572 4.72306 4.85051 4.89065 4.93880 5.05365 5.17648 5.25016 5.32722 5.53852 5.63468 5.72413 5.83643 6.22887 6.30427 6.50123 6.50808 6.83320 7.02811 7.51709 9.02106 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.075132 B = 0.014652 C = 0.013715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.587646 B = 1910.596933 C = 2041.099163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.057 3.943 10 H 0.009 0.991 11 C -0.103 4.103 12 C -0.103 4.103 13 C -0.102 4.102 14 C 0.098 3.902 15 H 0.041 0.959 16 N -0.847 5.847 17 C -0.099 4.099 18 H 0.258 0.742 19 H 0.017 0.983 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.345 0.655 26 H 0.341 0.659 27 H 0.046 0.954 28 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -8.819 -0.707 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.064 0.936 9 C 0.038 3.962 10 H 0.027 0.973 11 C -0.141 4.141 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.013 4.013 15 H 0.059 0.941 16 N -0.379 5.379 17 C -0.137 4.137 18 H 0.067 0.933 19 H 0.036 0.964 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.065 0.935 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.237 -8.062 -1.011 8.218 hybrid contribution 0.900 0.415 0.280 1.030 sum 2.137 -7.646 -0.731 7.973 Atomic orbital electron populations 1.70064 1.07107 1.26639 1.51813 1.25744 0.95656 1.02250 0.95219 0.85634 0.79071 0.80142 0.77559 1.19309 1.20677 1.20651 1.21787 0.92821 0.93038 1.49873 0.93631 1.18440 0.92817 0.90924 0.93990 0.97303 1.21404 0.98689 0.96516 0.97462 1.21370 0.97684 0.95030 0.99995 1.21501 0.97592 0.98126 0.96759 1.21278 0.93304 0.95679 0.91077 0.94075 1.58525 1.32478 1.42686 1.04206 1.21571 0.97593 0.95196 0.99379 0.93331 0.96434 0.93156 0.92870 0.93478 0.90865 0.92041 0.84193 0.84561 0.93537 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 11.32 21.45 0.24 -55.06 15 2 C 0.01 0.54 5.30 84.66 0.45 0.98 15 3 Si 0.95 45.24 29.54 68.60 2.03 47.27 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 7 C -0.54 -30.99 8.56 25.60 0.22 -30.77 15 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 15 9 C 0.06 2.96 1.94 -11.54 -0.02 2.94 15 10 H 0.01 0.51 7.60 -2.39 -0.02 0.49 15 11 C -0.10 -5.14 4.98 30.60 0.15 -4.99 15 12 C -0.10 -4.14 5.77 30.60 0.18 -3.97 15 13 C -0.10 -3.33 5.61 30.59 0.17 -3.16 15 14 C 0.10 3.27 3.57 44.91 0.16 3.43 15 15 H 0.04 1.18 8.14 -2.39 -0.02 1.17 15 16 N -0.85 -26.85 7.72 -168.69 -1.30 -28.15 15 17 C -0.10 -4.20 4.79 30.59 0.15 -4.05 15 18 H 0.26 14.75 8.31 -92.71 -0.77 13.98 15 19 H 0.02 0.85 8.14 -2.39 -0.02 0.84 15 20 H 0.05 2.88 6.07 -2.39 -0.01 2.86 15 21 H 0.05 2.25 7.60 -2.39 -0.02 2.24 15 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.34 8.74 9.04 -89.70 -0.81 7.93 15 26 H 0.34 10.20 8.99 -89.69 -0.81 9.40 15 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 Total: -1.00 -63.31 222.77 1.94 -61.37 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.48 Total: 14.17 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 1.45 Total: -39.59 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.06 Total: -83.22 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -63.31 1.94 -61.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600403.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.433 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds