Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47138 * 2 1 4 4 C 1.53000 * 109.47079 * 120.00393 * 2 1 3 5 5 N 1.46904 * 109.47054 * 240.00268 * 2 1 3 6 6 C 1.46891 * 111.00061 * 133.43944 * 5 2 1 7 7 C 1.46897 * 110.99953 * 65.62977 * 5 2 1 8 8 H 1.09008 * 117.63576 * 210.63556 * 7 5 2 9 9 C 1.50703 * 117.63530 * 356.25232 * 7 5 2 10 10 H 1.08000 * 120.00010 * 5.36050 * 9 7 5 11 11 C 1.37880 * 119.99990 * 185.36273 * 9 7 5 12 12 N 1.31520 * 119.99956 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00075 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46936 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46924 * 119.99622 * 13 11 9 16 16 H 1.48494 * 109.47222 * 239.99644 * 13 11 9 17 17 H 1.08994 * 109.47318 * 76.82517 * 1 2 3 18 18 H 1.09001 * 109.46909 * 196.82448 * 1 2 3 19 19 H 1.08996 * 109.47048 * 316.82124 * 1 2 3 20 20 H 1.09004 * 109.46546 * 34.32067 * 3 2 1 21 21 H 1.08999 * 109.46726 * 154.32012 * 3 2 1 22 22 H 1.08998 * 109.46841 * 274.32124 * 3 2 1 23 23 H 1.08994 * 109.47310 * 59.99945 * 4 2 1 24 24 H 1.09005 * 109.46522 * 180.02562 * 4 2 1 25 25 H 1.08999 * 109.47014 * 299.99755 * 4 2 1 26 26 H 1.09006 * 117.63748 * 3.54838 * 6 5 2 27 27 H 1.09000 * 117.63811 * 149.36340 * 6 5 2 28 28 H 0.97000 * 119.99809 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0197 -0.6925 -1.1995 6 6 3.0842 0.0789 -1.8550 7 6 1.6616 0.0470 -2.4172 8 1 1.4902 -0.5292 -3.3266 9 6 0.8160 1.2845 -2.2604 10 1 0.5679 1.6476 -1.2740 11 6 0.3590 1.9532 -3.3762 12 7 0.6615 1.5113 -4.5775 13 14 -0.6898 3.4866 -3.1818 14 1 -0.8851 3.7729 -1.7379 15 1 -0.0078 4.6377 -3.8263 16 1 -2.0095 3.2688 -3.8269 17 1 -0.3633 0.2342 -1.0005 18 1 -0.3633 -0.9837 0.2975 19 1 -0.3633 0.7494 0.7032 20 1 1.3609 2.0680 0.5795 21 1 3.0343 1.4763 0.4453 22 1 2.0881 1.8109 -1.0247 23 1 1.6767 -1.7489 1.2492 24 1 3.1301 -0.7209 1.2493 25 1 1.6767 -0.2075 2.1392 26 1 3.4155 0.9970 -1.3696 27 1 3.8530 -0.4760 -2.3926 28 1 0.3397 1.9815 -5.3625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584656891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = 64.112178 kcal Electronic energy + Delta-G solvation = -10386.180680 eV Core-core repulsion = 8632.686635 eV Total energy + Delta-G solvation = -1753.494045 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.64621 -33.09884 -32.38591 -27.63502 -26.69225 -25.27529 -22.90458 -20.44194 -17.77558 -16.98857 -14.99716 -14.29682 -13.85694 -13.46500 -12.83061 -12.26057 -11.93830 -11.31178 -11.16236 -10.94086 -10.81469 -10.78232 -10.57638 -10.31766 -9.96306 -9.63657 -9.27935 -8.66091 -8.45825 -7.60662 -6.22373 -4.17111 3.19484 3.29040 3.31930 4.27377 4.92883 5.18316 5.56898 5.79492 6.04981 6.13918 6.25448 6.32131 6.49512 6.55740 6.57612 6.62635 6.73697 6.80023 6.97742 7.13289 7.38577 7.45559 7.59803 7.76667 7.88230 8.37481 8.85728 9.36773 10.86684 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059099 B = 0.018533 C = 0.016140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.669416 B = 1510.431163 C = 1734.408200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.125 4.125 5 N -0.483 5.483 6 C -0.142 4.142 7 C 0.131 3.869 8 H 0.100 0.900 9 C -0.526 4.526 10 H 0.097 0.903 11 C 0.072 3.928 12 N -0.874 5.874 13 Si 0.893 3.107 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.281 1.281 17 H 0.107 0.893 18 H 0.036 0.964 19 H 0.040 0.960 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.136 0.864 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 0.662 5.814 5.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.006 4.006 3 C -0.263 4.263 4 C -0.183 4.183 5 N -0.207 5.207 6 C -0.270 4.270 7 C 0.024 3.976 8 H 0.117 0.883 9 C -0.563 4.563 10 H 0.115 0.885 11 C -0.134 4.134 12 N -0.510 5.510 13 Si 0.720 3.280 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.207 1.207 17 H 0.125 0.875 18 H 0.055 0.945 19 H 0.059 0.941 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.154 0.846 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.322 -0.189 5.904 5.916 hybrid contribution -0.425 1.585 0.174 1.650 sum -0.103 1.395 6.077 6.236 Atomic orbital electron populations 1.22433 0.94489 0.99336 1.05296 1.21093 0.95397 0.92540 0.91614 1.23568 0.98270 0.97089 1.07417 1.21743 1.00104 0.99944 0.96494 1.72442 1.11943 1.35276 1.01069 1.24517 0.94114 1.00457 1.07918 1.21186 0.90656 0.94880 0.90890 0.88262 1.21585 1.31443 1.09029 0.94219 0.88536 1.25102 0.95465 0.97682 0.95165 1.69978 1.43882 1.39368 0.97738 0.86505 0.80147 0.82696 0.78653 1.19349 1.20674 1.20678 0.87472 0.94527 0.94134 0.94047 0.95129 0.84629 0.93058 0.93641 0.93583 0.88655 0.90240 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 7.93 37.16 0.29 -3.00 15 2 C 0.08 1.78 0.93 -131.59 -0.12 1.65 15 3 C -0.21 -4.26 5.90 37.16 0.22 -4.04 15 4 C -0.13 -2.28 8.60 37.16 0.32 -1.96 15 5 N -0.48 -11.31 7.79 -212.47 -1.66 -12.96 15 6 C -0.14 -3.26 9.98 -3.83 -0.04 -3.30 15 7 C 0.13 3.34 5.92 -68.87 -0.41 2.93 15 8 H 0.10 2.76 7.76 -51.92 -0.40 2.35 15 9 C -0.53 -13.47 4.70 -34.44 -0.16 -13.63 15 10 H 0.10 2.38 3.33 -52.49 -0.17 2.21 15 11 C 0.07 1.88 5.46 -17.82 -0.10 1.79 15 12 N -0.87 -24.19 13.04 55.43 0.72 -23.47 15 13 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 15 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 17 H 0.11 2.51 4.89 -51.93 -0.25 2.25 15 18 H 0.04 0.71 8.03 -51.93 -0.42 0.29 15 19 H 0.04 0.76 7.70 -51.93 -0.40 0.36 15 20 H 0.04 0.80 7.57 -51.93 -0.39 0.41 15 21 H 0.03 0.58 7.51 -51.93 -0.39 0.19 15 22 H 0.14 3.13 3.15 -51.93 -0.16 2.97 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.04 0.81 8.12 -51.93 -0.42 0.39 15 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.10 2.12 4.95 -51.93 -0.26 1.86 15 27 H 0.08 1.73 8.14 -51.93 -0.42 1.31 15 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 216.82 15.07 3.27 3.27 Total: -1.00 -26.69 216.82 -6.36 -33.04 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.68 Total: 4.61 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 0.01 Total: -19.56 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.93 Total: -36.43 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -26.69 -6.36 -33.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584656891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.155 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds