Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47138 * 2 1 4 4 C 1.53000 * 109.47079 * 120.00393 * 2 1 3 5 5 N 1.46904 * 109.47054 * 240.00268 * 2 1 3 6 6 C 1.46891 * 111.00061 * 133.43944 * 5 2 1 7 7 C 1.46897 * 110.99953 * 65.62977 * 5 2 1 8 8 H 1.09008 * 117.63576 * 210.63556 * 7 5 2 9 9 C 1.50703 * 117.63530 * 356.25232 * 7 5 2 10 10 H 1.08000 * 120.00010 * 5.36050 * 9 7 5 11 11 C 1.37880 * 119.99990 * 185.36273 * 9 7 5 12 12 N 1.31520 * 119.99956 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00075 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46936 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46924 * 119.99622 * 13 11 9 16 16 H 1.48494 * 109.47222 * 239.99644 * 13 11 9 17 17 H 1.08994 * 109.47318 * 76.82517 * 1 2 3 18 18 H 1.09001 * 109.46909 * 196.82448 * 1 2 3 19 19 H 1.08996 * 109.47048 * 316.82124 * 1 2 3 20 20 H 1.09004 * 109.46546 * 34.32067 * 3 2 1 21 21 H 1.08999 * 109.46726 * 154.32012 * 3 2 1 22 22 H 1.08998 * 109.46841 * 274.32124 * 3 2 1 23 23 H 1.08994 * 109.47310 * 59.99945 * 4 2 1 24 24 H 1.09005 * 109.46522 * 180.02562 * 4 2 1 25 25 H 1.08999 * 109.47014 * 299.99755 * 4 2 1 26 26 H 1.09006 * 117.63748 * 3.54838 * 6 5 2 27 27 H 1.09000 * 117.63811 * 149.36340 * 6 5 2 28 28 H 0.97000 * 119.99809 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0197 -0.6925 -1.1995 6 6 3.0842 0.0789 -1.8550 7 6 1.6616 0.0470 -2.4172 8 1 1.4902 -0.5292 -3.3266 9 6 0.8160 1.2845 -2.2604 10 1 0.5679 1.6476 -1.2740 11 6 0.3590 1.9532 -3.3762 12 7 0.6615 1.5113 -4.5775 13 14 -0.6898 3.4866 -3.1818 14 1 -0.8851 3.7729 -1.7379 15 1 -0.0078 4.6377 -3.8263 16 1 -2.0095 3.2688 -3.8269 17 1 -0.3633 0.2342 -1.0005 18 1 -0.3633 -0.9837 0.2975 19 1 -0.3633 0.7494 0.7032 20 1 1.3609 2.0680 0.5795 21 1 3.0343 1.4763 0.4453 22 1 2.0881 1.8109 -1.0247 23 1 1.6767 -1.7489 1.2492 24 1 3.1301 -0.7209 1.2493 25 1 1.6767 -0.2075 2.1392 26 1 3.4155 0.9970 -1.3696 27 1 3.8530 -0.4760 -2.3926 28 1 0.3397 1.9815 -5.3625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584656891.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = 45.316124 kcal Electronic energy + Delta-G solvation = -10386.995738 eV Core-core repulsion = 8632.686635 eV Total energy + Delta-G solvation = -1754.309103 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.44411 -34.86691 -34.28458 -29.39206 -28.35217 -27.02284 -24.71077 -22.38271 -19.52363 -18.86748 -16.81482 -16.09483 -15.68230 -15.11521 -14.55376 -14.10012 -13.45044 -13.02745 -12.89500 -12.69651 -12.56033 -12.41804 -12.27364 -12.01762 -11.73362 -11.44497 -11.06233 -10.58855 -10.32504 -9.47373 -8.19400 -6.17555 1.42784 1.46238 1.56721 2.40594 2.98013 3.42845 3.84696 4.18870 4.31145 4.49343 4.65803 4.70416 4.88783 4.91806 4.98314 5.00953 5.05823 5.07764 5.33273 5.35379 5.51460 5.70597 5.75694 5.86937 6.04997 6.46485 6.89417 7.37623 8.91613 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.059099 B = 0.018533 C = 0.016140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.669416 B = 1510.431163 C = 1734.408200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.072 3.928 3 C -0.201 4.201 4 C -0.118 4.118 5 N -0.487 5.487 6 C -0.128 4.128 7 C 0.108 3.892 8 H 0.064 0.936 9 C -0.519 4.519 10 H 0.108 0.892 11 C 0.018 3.982 12 N -0.917 5.917 13 Si 0.957 3.043 14 H -0.258 1.258 15 H -0.280 1.280 16 H -0.283 1.283 17 H 0.076 0.924 18 H 0.044 0.956 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.110 0.890 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 1.401 7.756 7.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 C -0.258 4.258 4 C -0.176 4.176 5 N -0.211 5.211 6 C -0.257 4.257 7 C 0.000 4.000 8 H 0.082 0.918 9 C -0.556 4.556 10 H 0.126 0.874 11 C -0.183 4.183 12 N -0.555 5.555 13 Si 0.782 3.218 14 H -0.181 1.181 15 H -0.205 1.205 16 H -0.208 1.208 17 H 0.095 0.905 18 H 0.063 0.937 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.128 0.872 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.300 0.545 7.868 7.892 hybrid contribution -0.376 1.269 -0.379 1.376 sum -0.075 1.814 7.489 7.706 Atomic orbital electron populations 1.22349 0.94412 1.00506 1.03974 1.21352 0.95655 0.93156 0.91664 1.23395 0.99620 0.96777 1.06056 1.21683 1.00283 0.99898 0.95751 1.72409 1.11554 1.35884 1.01296 1.24581 0.93173 1.00935 1.06976 1.20952 0.92972 0.95247 0.90849 0.91769 1.21832 1.30643 1.08492 0.94660 0.87416 1.25895 0.96920 1.00659 0.94872 1.70106 1.45832 1.41051 0.98510 0.85501 0.78220 0.79064 0.79011 1.18120 1.20536 1.20845 0.90502 0.93716 0.92039 0.92675 0.93513 0.87196 0.93004 0.93335 0.91069 0.87535 0.89458 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 7.93 71.98 0.57 -5.54 15 2 C 0.07 2.86 0.93 3.53 0.00 2.86 15 3 C -0.20 -7.72 5.90 71.98 0.42 -7.30 15 4 C -0.12 -3.90 8.60 71.98 0.62 -3.28 15 5 N -0.49 -22.32 7.79 -826.13 -6.44 -28.75 15 6 C -0.13 -5.80 9.98 86.30 0.86 -4.93 15 7 C 0.11 5.55 5.92 44.17 0.26 5.81 15 8 H 0.06 3.72 7.76 -2.38 -0.02 3.71 15 9 C -0.52 -26.53 4.70 25.60 0.12 -26.41 15 10 H 0.11 5.16 3.33 -2.91 -0.01 5.16 15 11 C 0.02 0.94 5.46 84.65 0.46 1.40 15 12 N -0.92 -51.97 13.04 21.45 0.28 -51.69 15 13 Si 0.96 41.10 29.54 68.60 2.03 43.13 15 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 15 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 17 H 0.08 3.52 4.89 -2.39 -0.01 3.51 15 18 H 0.04 1.64 8.03 -2.39 -0.02 1.62 15 19 H 0.06 2.12 7.70 -2.39 -0.02 2.10 15 20 H 0.05 1.94 7.57 -2.39 -0.02 1.92 15 21 H 0.05 1.62 7.51 -2.39 -0.02 1.60 15 22 H 0.11 4.87 3.15 -2.39 -0.01 4.86 15 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.05 1.56 8.12 -2.38 -0.02 1.54 15 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.11 4.55 4.95 -2.38 -0.01 4.54 15 27 H 0.09 3.74 8.14 -2.39 -0.02 3.72 15 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 15 Total: -1.00 -56.01 216.82 0.33 -55.68 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.14 Total: 19.02 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.32 Total: -37.38 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -6.16 Total: -80.44 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -56.01 0.33 -55.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584656891.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.992 kcal (2) G-P(sol) polarization free energy of solvation -56.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds