Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47640 * 2 1 4 4 C 1.53002 * 109.47332 * 239.99644 * 2 1 3 5 5 N 1.46905 * 109.46872 * 120.00222 * 2 1 3 6 6 C 1.47526 * 110.94875 * 133.94753 * 5 2 1 7 7 C 1.46894 * 111.00213 * 66.31483 * 5 2 1 8 8 H 1.09000 * 117.63548 * 356.25070 * 7 5 2 9 9 C 1.50698 * 117.63530 * 210.63300 * 7 5 2 10 10 H 1.08007 * 120.00030 * 0.71216 * 9 7 5 11 11 C 1.37879 * 120.00346 * 180.98801 * 9 7 5 12 12 N 1.31516 * 119.99850 * 359.72061 * 11 9 7 13 13 Si 1.86794 * 120.00238 * 179.72874 * 11 9 7 14 14 H 1.48500 * 109.47166 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47820 * 119.99704 * 13 11 9 16 16 H 1.48502 * 109.47145 * 239.99748 * 13 11 9 17 17 H 1.08996 * 109.47518 * 300.00132 * 1 2 3 18 18 H 1.09000 * 109.47384 * 60.00215 * 1 2 3 19 19 H 1.09003 * 109.47650 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47423 * 180.02562 * 3 2 1 21 21 H 1.09000 * 109.46556 * 300.00291 * 3 2 1 22 22 H 1.09004 * 109.46985 * 59.99608 * 3 2 1 23 23 H 1.09001 * 109.47108 * 291.79482 * 4 2 1 24 24 H 1.09000 * 109.46848 * 51.78814 * 4 2 1 25 25 H 1.09004 * 109.47285 * 171.78888 * 4 2 1 26 26 H 1.09004 * 117.75256 * 149.48854 * 6 5 2 27 27 H 1.09001 * 117.59187 * 3.53959 * 6 5 2 28 28 H 0.96998 * 119.99870 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0195 -0.6926 1.1995 6 6 3.0968 -1.6409 0.8581 7 6 1.6756 -2.1201 1.1604 8 1 1.0721 -2.4721 0.3237 9 6 1.4380 -2.8182 2.4746 10 1 1.5115 -2.2664 3.4002 11 6 1.1323 -4.1625 2.4960 12 7 1.0427 -4.8344 1.3690 13 14 0.8452 -5.0293 4.1255 14 1 1.0039 -4.0581 5.2376 15 1 -0.5287 -5.5921 4.1517 16 1 1.8328 -6.1271 4.2830 17 1 -0.3634 0.5138 0.8899 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 3.1300 1.4424 -0.0005 21 1 1.6767 1.9562 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 1.8014 -1.7826 -1.1788 24 1 1.5617 -0.2993 -2.1331 25 1 3.1201 -0.5960 -1.3256 26 1 3.8642 -1.8291 1.6091 27 1 3.4314 -1.6730 -0.1787 28 1 0.8273 -5.7800 1.3840 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584656892.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = 13.088732 kcal Electronic energy + Delta-G solvation = -10045.796297 eV Core-core repulsion = 8290.089709 eV Total energy + Delta-G solvation = -1755.706588 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.00010 -35.36913 -34.00331 -28.68542 -28.25984 -27.91087 -24.72689 -22.51474 -19.42443 -18.66666 -17.30855 -16.55255 -15.44667 -15.08014 -14.52974 -13.81224 -13.65693 -13.37437 -13.02156 -12.85661 -12.67323 -12.54951 -12.23949 -12.18825 -11.91107 -11.57693 -11.28042 -11.01606 -10.55520 -9.50592 -8.22672 -6.27063 1.41845 1.42968 1.56737 2.39736 2.97599 3.34760 3.71578 4.00445 4.19594 4.31054 4.46570 4.54552 4.67483 4.78154 4.83517 4.89269 4.92723 4.98083 5.13465 5.15106 5.44132 5.47593 5.54480 5.71147 6.18125 6.41292 6.80983 7.35610 8.88549 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.078235 B = 0.012975 C = 0.012808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.808668 B = 2157.518811 C = 2185.660249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.170 4.170 5 N -0.479 5.479 6 C -0.126 4.126 7 C 0.117 3.883 8 H 0.065 0.935 9 C -0.505 4.505 10 H 0.050 0.950 11 C 0.018 3.982 12 N -0.919 5.919 13 Si 0.970 3.030 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.273 1.273 17 H 0.050 0.950 18 H 0.083 0.917 19 H 0.032 0.968 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 6.577 -3.879 7.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 C -0.174 4.174 4 C -0.227 4.227 5 N -0.204 5.204 6 C -0.254 4.254 7 C 0.009 3.991 8 H 0.083 0.917 9 C -0.543 4.543 10 H 0.068 0.932 11 C -0.182 4.182 12 N -0.557 5.557 13 Si 0.794 3.206 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.199 1.199 17 H 0.069 0.931 18 H 0.102 0.898 19 H 0.052 0.948 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.383 7.099 -3.344 7.857 hybrid contribution -0.113 -1.087 0.004 1.093 sum 0.270 6.012 -3.340 6.883 Atomic orbital electron populations 1.21830 0.94065 1.01011 1.02209 1.21745 0.95742 0.96516 0.89844 1.21614 1.00587 0.93095 1.02129 1.22485 1.01620 1.00386 0.98239 1.72596 1.11212 1.07325 1.29267 1.24694 0.93572 1.06078 1.01015 1.20914 0.93123 0.87498 0.97527 0.91736 1.20791 1.47756 0.94075 0.91652 0.93171 1.25817 0.94119 0.97812 1.00467 1.70054 1.48541 1.09339 1.27816 0.85328 0.78056 0.78195 0.78982 1.19422 1.20010 1.19874 0.93079 0.89780 0.94848 0.93097 0.90131 0.92972 0.93767 0.90302 0.91426 0.89734 0.87547 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.45 71.98 0.61 -4.16 15 2 C 0.05 1.92 0.93 3.52 0.00 1.92 15 3 C -0.12 -3.51 8.79 71.98 0.63 -2.87 15 4 C -0.17 -5.70 6.90 71.98 0.50 -5.21 15 5 N -0.48 -22.28 7.73 -824.48 -6.37 -28.65 15 6 C -0.13 -5.84 9.79 86.18 0.84 -5.00 15 7 C 0.12 6.23 4.25 44.17 0.19 6.42 15 8 H 0.07 3.65 5.46 -2.39 -0.01 3.64 15 9 C -0.50 -29.34 9.43 25.60 0.24 -29.10 15 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 15 11 C 0.02 1.02 5.46 84.66 0.46 1.48 15 12 N -0.92 -53.59 13.13 21.45 0.28 -53.31 15 13 Si 0.97 44.08 29.54 68.60 2.03 46.10 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 17 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 18 H 0.08 2.35 8.14 -2.39 -0.02 2.34 15 19 H 0.03 1.36 6.86 -2.39 -0.02 1.34 15 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.08 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.05 1.60 8.14 -2.38 -0.02 1.58 15 23 H 0.04 1.74 5.65 -2.39 -0.01 1.72 15 24 H 0.08 2.16 8.13 -2.39 -0.02 2.15 15 25 H 0.07 2.13 6.69 -2.39 -0.02 2.11 15 26 H 0.08 4.02 8.14 -2.39 -0.02 4.00 15 27 H 0.11 4.39 4.77 -2.39 -0.01 4.38 15 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 15 Total: -1.00 -61.69 228.26 0.53 -61.16 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.12 Total: 11.21 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 3.48 Total: -36.52 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -6.09 Total: -81.96 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -61.69 0.53 -61.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584656892.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.250 kcal (2) G-P(sol) polarization free energy of solvation -61.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds