Wall clock time and date at job start Mon Mar 30 2020 02:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 112.77830 * 2 1 4 4 C 1.53500 * 113.47035 * 229.22008 * 2 1 3 5 5 C 1.53754 * 83.25839 * 218.98279 * 4 2 1 6 6 C 1.53000 * 113.46590 * 271.50421 * 5 4 2 7 7 C 1.52998 * 113.55480 * 140.98384 * 5 4 2 8 8 N 1.47066 * 113.46690 * 130.78339 * 2 1 3 9 9 C 1.36932 * 136.05889 * 321.86378 * 8 2 1 10 10 H 1.07994 * 120.00245 * 156.28740 * 9 8 2 11 11 C 1.38813 * 120.00123 * 336.01777 * 9 8 2 12 12 N 1.31625 * 119.99893 * 349.59842 * 11 9 8 13 13 Si 1.86795 * 120.00355 * 169.59745 * 11 9 8 14 14 H 1.48503 * 109.47041 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47313 * 119.99975 * 13 11 9 16 16 H 1.48504 * 109.47176 * 240.00182 * 13 11 9 17 17 H 1.09002 * 109.47466 * 295.05395 * 1 2 3 18 18 H 1.09002 * 109.47330 * 55.05607 * 1 2 3 19 19 H 1.09001 * 109.47143 * 175.04770 * 1 2 3 20 20 H 1.09001 * 114.20357 * 332.73862 * 4 2 1 21 21 H 1.09001 * 114.20661 * 105.36627 * 4 2 1 22 22 H 1.08997 * 109.47431 * 177.82200 * 6 5 4 23 23 H 1.09006 * 109.46934 * 297.82424 * 6 5 4 24 24 H 1.09004 * 109.47041 * 57.81819 * 6 5 4 25 25 H 1.08998 * 109.46849 * 302.14022 * 7 5 4 26 26 H 1.09005 * 109.46557 * 62.13472 * 7 5 4 27 27 H 1.09000 * 109.47257 * 182.13463 * 7 5 4 28 28 H 0.97002 * 120.00178 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0051 0.0000 4 6 2.1413 -0.9196 -1.0662 5 6 3.1581 -1.2301 0.0445 6 6 4.3530 -0.2746 0.0611 7 6 3.5752 -2.7012 0.0979 8 7 2.1156 -0.8812 1.0215 9 6 1.8227 -1.2221 2.3149 10 1 2.1756 -2.1591 2.7196 11 6 1.0769 -0.3607 3.1078 12 7 0.8255 0.8632 2.6939 13 14 0.4299 -0.9384 4.7622 14 1 0.8466 -2.3450 4.9928 15 1 0.9809 -0.0757 5.8379 16 1 -1.0527 -0.8542 4.7707 17 1 -0.3634 0.4352 0.9310 18 1 -0.3634 0.5886 -0.8424 19 1 -0.3633 -1.0238 -0.0887 20 1 1.5087 -1.7621 -1.3457 21 1 2.5610 -0.3930 -1.9233 22 1 5.0097 -0.5284 0.8932 23 1 4.9027 -0.3639 -0.8759 24 1 3.9978 0.7493 0.1778 25 1 2.6922 -3.3242 0.2394 26 1 4.0662 -2.9736 -0.8364 27 1 4.2644 -2.8536 0.9285 28 1 0.3040 1.4651 3.2478 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687712394.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:25 Heat of formation + Delta-G solvation = 44.480405 kcal Electronic energy + Delta-G solvation = -10330.783191 eV Core-core repulsion = 8576.437848 eV Total energy + Delta-G solvation = -1754.345343 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.72308 -32.44956 -30.73307 -28.27938 -26.66414 -25.97382 -23.35272 -19.73250 -18.33071 -15.86738 -14.85753 -13.96672 -13.72575 -13.58846 -12.70998 -12.06255 -11.63354 -11.61229 -11.18692 -10.97847 -10.90216 -10.72127 -10.38166 -10.30664 -10.23843 -9.59238 -9.41314 -8.90010 -8.37059 -6.63876 -5.73008 -3.09877 3.40081 3.46994 3.48903 4.49563 5.20841 5.44632 5.62550 6.00597 6.02623 6.29418 6.35125 6.41046 6.46166 6.56627 6.61729 6.77104 6.83242 6.94497 7.01800 7.03987 7.25356 7.60797 7.71225 7.93344 8.12381 9.10794 9.76417 10.83195 11.42304 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053616 B = 0.018842 C = 0.016387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.109243 B = 1485.666984 C = 1708.282150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H 0.043 0.957 4 C -0.160 4.160 5 C 0.148 3.852 6 C -0.146 4.146 7 C -0.136 4.136 8 N -0.588 5.588 9 C -0.211 4.211 10 H 0.073 0.927 11 C -0.003 4.003 12 N -0.905 5.905 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 H 0.089 0.911 18 H 0.024 0.976 19 H 0.034 0.966 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -2.813 -5.332 6.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 H 0.061 0.939 4 C -0.198 4.198 5 C 0.059 3.941 6 C -0.206 4.206 7 C -0.195 4.195 8 N -0.312 5.312 9 C -0.339 4.339 10 H 0.091 0.909 11 C -0.200 4.200 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.217 1.217 17 H 0.107 0.893 18 H 0.043 0.957 19 H 0.053 0.947 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.285 -2.774 -4.979 6.141 hybrid contribution -0.254 -0.040 1.027 1.059 sum 2.031 -2.814 -3.952 5.259 Atomic orbital electron populations 1.22066 0.97029 0.99432 1.01925 1.21529 0.92991 0.93046 0.85061 0.93928 1.23808 0.99479 1.00701 0.95861 1.21530 0.89895 0.92734 0.89925 1.22049 0.98327 1.00709 0.99519 1.21834 1.00696 0.97310 0.99632 1.46094 1.24146 1.51105 1.09863 1.18892 1.29495 0.99571 0.85957 0.90906 1.25057 1.02557 0.94904 0.97530 1.69904 1.42574 1.04948 1.37596 0.86178 0.78448 0.77928 0.84041 1.20365 1.21824 1.21691 0.89278 0.95706 0.94729 0.90763 0.92937 0.93464 0.94012 0.92560 0.92628 0.93773 0.93702 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.48 37.16 0.35 -3.08 15 2 C 0.18 4.30 3.36 -72.39 -0.24 4.06 15 3 H 0.04 1.10 7.28 -51.92 -0.38 0.72 15 4 C -0.16 -3.19 7.16 -26.08 -0.19 -3.38 15 5 C 0.15 3.16 1.63 -136.15 -0.22 2.93 15 6 C -0.15 -2.89 9.27 37.16 0.34 -2.55 15 7 C -0.14 -2.58 9.25 37.16 0.34 -2.24 15 8 N -0.59 -15.24 3.21 -161.63 -0.52 -15.76 15 9 C -0.21 -5.95 10.35 -15.06 -0.16 -6.11 15 10 H 0.07 2.03 7.85 -52.49 -0.41 1.62 15 11 C 0.00 -0.08 5.20 -17.43 -0.09 -0.17 15 12 N -0.90 -26.67 10.49 55.49 0.58 -26.09 15 13 Si 0.90 22.23 29.57 -169.99 -5.03 17.21 15 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 17 H 0.09 2.37 5.80 -51.93 -0.30 2.07 15 18 H 0.02 0.50 8.14 -51.93 -0.42 0.07 15 19 H 0.03 0.79 8.10 -51.93 -0.42 0.37 15 20 H 0.07 1.44 8.07 -51.93 -0.42 1.02 15 21 H 0.05 0.92 8.11 -51.93 -0.42 0.50 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 24 H 0.06 1.19 7.02 -51.93 -0.36 0.83 15 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 229.67 15.07 3.46 3.46 Total: -1.00 -29.64 229.67 -5.75 -35.39 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.39 Total: -3.68 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.14 Total: -10.53 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.06 Total: -41.85 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.64 -5.75 -35.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712394.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.870 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds