Wall clock time and date at job start Mon Mar 30 2020 02:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 112.77830 * 2 1 4 4 C 1.53500 * 113.47035 * 229.22008 * 2 1 3 5 5 C 1.53754 * 83.25839 * 218.98279 * 4 2 1 6 6 C 1.53000 * 113.46590 * 271.50421 * 5 4 2 7 7 C 1.52998 * 113.55480 * 140.98384 * 5 4 2 8 8 N 1.47066 * 113.46690 * 130.78339 * 2 1 3 9 9 C 1.36932 * 136.05889 * 321.86378 * 8 2 1 10 10 H 1.07994 * 120.00245 * 156.28740 * 9 8 2 11 11 C 1.38813 * 120.00123 * 336.01777 * 9 8 2 12 12 N 1.31625 * 119.99893 * 349.59842 * 11 9 8 13 13 Si 1.86795 * 120.00355 * 169.59745 * 11 9 8 14 14 H 1.48503 * 109.47041 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47313 * 119.99975 * 13 11 9 16 16 H 1.48504 * 109.47176 * 240.00182 * 13 11 9 17 17 H 1.09002 * 109.47466 * 295.05395 * 1 2 3 18 18 H 1.09002 * 109.47330 * 55.05607 * 1 2 3 19 19 H 1.09001 * 109.47143 * 175.04770 * 1 2 3 20 20 H 1.09001 * 114.20357 * 332.73862 * 4 2 1 21 21 H 1.09001 * 114.20661 * 105.36627 * 4 2 1 22 22 H 1.08997 * 109.47431 * 177.82200 * 6 5 4 23 23 H 1.09006 * 109.46934 * 297.82424 * 6 5 4 24 24 H 1.09004 * 109.47041 * 57.81819 * 6 5 4 25 25 H 1.08998 * 109.46849 * 302.14022 * 7 5 4 26 26 H 1.09005 * 109.46557 * 62.13472 * 7 5 4 27 27 H 1.09000 * 109.47257 * 182.13463 * 7 5 4 28 28 H 0.97002 * 120.00178 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0051 0.0000 4 6 2.1413 -0.9196 -1.0662 5 6 3.1581 -1.2301 0.0445 6 6 4.3530 -0.2746 0.0611 7 6 3.5752 -2.7012 0.0979 8 7 2.1156 -0.8812 1.0215 9 6 1.8227 -1.2221 2.3149 10 1 2.1756 -2.1591 2.7196 11 6 1.0769 -0.3607 3.1078 12 7 0.8255 0.8632 2.6939 13 14 0.4299 -0.9384 4.7622 14 1 0.8466 -2.3450 4.9928 15 1 0.9809 -0.0757 5.8379 16 1 -1.0527 -0.8542 4.7707 17 1 -0.3634 0.4352 0.9310 18 1 -0.3634 0.5886 -0.8424 19 1 -0.3633 -1.0238 -0.0887 20 1 1.5087 -1.7621 -1.3457 21 1 2.5610 -0.3930 -1.9233 22 1 5.0097 -0.5284 0.8932 23 1 4.9027 -0.3639 -0.8759 24 1 3.9978 0.7493 0.1778 25 1 2.6922 -3.3242 0.2394 26 1 4.0662 -2.9736 -0.8364 27 1 4.2644 -2.8536 0.9285 28 1 0.3040 1.4651 3.2478 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687712394.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:25 Heat of formation + Delta-G solvation = 26.503598 kcal Electronic energy + Delta-G solvation = -10331.562724 eV Core-core repulsion = 8576.437848 eV Total energy + Delta-G solvation = -1755.124875 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.48105 -34.49432 -32.49166 -30.26866 -28.23747 -27.72133 -25.32198 -21.55252 -20.16953 -17.82414 -16.81774 -15.80064 -15.57103 -15.31625 -14.39168 -13.85629 -13.50770 -13.19710 -13.00084 -12.82331 -12.64840 -12.55359 -12.23086 -12.06281 -11.98858 -11.41926 -11.28807 -10.75342 -10.32870 -8.67245 -7.85360 -5.23003 1.44160 1.45220 1.55192 2.49353 3.32105 3.45616 3.91216 4.37764 4.41802 4.65313 4.72052 4.80801 4.89676 4.95201 5.00673 5.06118 5.19446 5.21789 5.28221 5.41163 5.56385 5.60214 5.93447 5.95824 6.13778 7.00188 7.67691 8.80332 9.29899 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053616 B = 0.018842 C = 0.016387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.109243 B = 1485.666984 C = 1708.282150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 H 0.018 0.982 4 C -0.134 4.134 5 C 0.136 3.864 6 C -0.139 4.139 7 C -0.129 4.129 8 N -0.617 5.617 9 C -0.220 4.220 10 H 0.070 0.930 11 C -0.055 4.055 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.294 1.294 16 H -0.292 1.292 17 H 0.054 0.946 18 H 0.052 0.948 19 H 0.033 0.967 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -3.862 -6.524 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.061 3.939 3 H 0.036 0.964 4 C -0.172 4.172 5 C 0.048 3.952 6 C -0.199 4.199 7 C -0.187 4.187 8 N -0.342 5.342 9 C -0.349 4.349 10 H 0.088 0.912 11 C -0.250 4.250 12 N -0.581 5.581 13 Si 0.794 3.206 14 H -0.192 1.192 15 H -0.221 1.221 16 H -0.219 1.219 17 H 0.072 0.928 18 H 0.071 0.929 19 H 0.052 0.948 20 H 0.102 0.898 21 H 0.104 0.896 22 H 0.058 0.942 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.967 -3.844 -6.191 7.868 hybrid contribution -0.420 0.283 1.335 1.427 sum 2.547 -3.561 -4.856 6.538 Atomic orbital electron populations 1.21939 0.97083 0.99428 1.01266 1.21615 0.93117 0.92588 0.86611 0.96395 1.23630 0.98209 0.99765 0.95565 1.21867 0.90036 0.94465 0.88790 1.21959 0.97821 0.98731 1.01367 1.21761 1.00324 0.95220 1.01430 1.46443 1.26685 1.51337 1.09704 1.19132 1.29056 0.99471 0.87269 0.91244 1.25735 1.03398 0.95137 1.00733 1.70058 1.43525 1.05900 1.38603 0.85222 0.77431 0.77829 0.80162 1.19223 1.22108 1.21910 0.92755 0.92945 0.94813 0.89810 0.89634 0.94221 0.89990 0.94921 0.93806 0.90034 0.94267 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.47 9.48 71.98 0.68 -5.78 15 2 C 0.17 7.87 3.36 41.79 0.14 8.01 15 3 H 0.02 0.95 7.28 -2.38 -0.02 0.93 15 4 C -0.13 -4.92 7.16 31.02 0.22 -4.70 15 5 C 0.14 5.50 1.63 0.49 0.00 5.50 15 6 C -0.14 -5.20 9.27 71.98 0.67 -4.54 15 7 C -0.13 -4.52 9.25 71.98 0.67 -3.85 15 8 N -0.62 -31.74 3.21 -665.27 -2.13 -33.87 15 9 C -0.22 -12.49 10.35 84.03 0.87 -11.62 15 10 H 0.07 3.88 7.85 -2.91 -0.02 3.85 15 11 C -0.06 -3.18 5.20 84.86 0.44 -2.74 15 12 N -0.93 -56.33 10.49 21.65 0.23 -56.10 15 13 Si 0.96 46.34 29.57 68.60 2.03 48.36 15 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 15 H -0.29 -14.12 7.11 99.48 0.71 -13.42 15 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 17 H 0.05 2.93 5.80 -2.39 -0.01 2.91 15 18 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 19 H 0.03 1.51 8.10 -2.39 -0.02 1.49 15 20 H 0.08 2.94 8.07 -2.39 -0.02 2.92 15 21 H 0.09 2.61 8.11 -2.39 -0.02 2.59 15 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 23 H 0.08 2.38 8.14 -2.38 -0.02 2.36 15 24 H 0.03 1.35 7.02 -2.38 -0.02 1.33 15 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 15 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 28 H 0.25 14.45 8.31 -92.71 -0.77 13.68 15 Total: -1.00 -63.70 229.67 4.91 -58.78 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.10 Total: 2.55 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.69 Total: -19.72 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.91 Total: -89.97 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -63.70 4.91 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712394.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.287 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds