Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46509 * 2 1 4 4 C 1.53009 * 109.46694 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.73600 * 313.76036 * 4 3 2 6 6 C 1.53489 * 113.46453 * 182.93807 * 4 3 2 7 7 C 1.53753 * 83.26000 * 218.98253 * 6 4 3 8 8 N 1.47067 * 87.88594 * 26.24299 * 7 6 4 9 9 C 1.36929 * 136.06244 * 152.96187 * 8 7 6 10 10 H 1.08002 * 120.00558 * 187.57384 * 9 8 7 11 11 C 1.38811 * 119.99860 * 7.57854 * 9 8 7 12 12 N 1.31618 * 120.00142 * 195.15071 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 14.87519 * 11 9 8 14 14 H 1.48497 * 109.46978 * 270.27466 * 13 11 9 15 15 H 1.48501 * 109.47114 * 30.27775 * 13 11 9 16 16 H 1.48496 * 109.47157 * 150.27852 * 13 11 9 17 17 H 1.09005 * 109.46795 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.47272 * 299.99649 * 1 2 3 19 19 H 1.08991 * 109.47295 * 60.00179 * 1 2 3 20 20 H 1.08999 * 109.47272 * 240.00351 * 2 1 3 21 21 H 1.08997 * 109.47060 * 119.99447 * 2 1 3 22 22 H 1.08999 * 109.47067 * 60.00225 * 3 2 1 23 23 H 1.08997 * 109.47008 * 299.99479 * 3 2 1 24 24 H 1.09006 * 114.21254 * 332.74169 * 6 4 3 25 25 H 1.09004 * 114.20627 * 105.37121 * 6 4 3 26 26 H 1.09000 * 113.46781 * 271.50882 * 7 6 4 27 27 H 1.09003 * 113.55115 * 140.98847 * 7 6 4 28 28 H 0.97000 * 120.00360 * 354.63239 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9909 0.7475 0.7270 6 6 4.1811 2.8488 0.0729 7 6 5.1984 2.2606 -0.9186 8 7 4.1562 1.3133 -1.3420 9 6 3.8637 0.6140 -2.4823 10 1 2.9377 0.0628 -2.5553 11 6 4.7573 0.6133 -3.5445 12 7 4.3664 0.2050 -4.7331 13 14 6.5126 1.1990 -3.2887 14 1 6.5885 2.6603 -3.5415 15 1 6.9303 0.9158 -1.8920 16 1 7.4142 0.4864 -4.2291 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5137 0.8900 22 1 1.6765 1.9564 0.8900 23 1 1.6766 1.9563 -0.8900 24 1 3.5485 3.6330 -0.3432 25 1 4.6003 3.1045 1.0460 26 1 6.0495 1.7817 -0.4344 27 1 5.4958 2.9575 -1.7023 28 1 3.4787 -0.1681 -4.8501 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = 18.891667 kcal Electronic energy + Delta-G solvation = -10027.616698 eV Core-core repulsion = 8272.161744 eV Total energy + Delta-G solvation = -1755.454954 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.23097 -35.38666 -34.49859 -30.26450 -29.18820 -24.87042 -24.49449 -22.10561 -20.96285 -19.27416 -17.05423 -16.46687 -16.05599 -15.38841 -15.05501 -14.39676 -13.78347 -13.30869 -13.16081 -12.86958 -12.79191 -12.43235 -12.01246 -11.80250 -11.64309 -11.50595 -11.27586 -10.77001 -10.66591 -9.15709 -8.54063 -5.37136 1.40309 1.52187 1.67443 2.57754 3.10765 3.21638 3.74323 4.06199 4.17525 4.27420 4.40152 4.62318 4.66050 4.75629 4.80533 4.85437 4.94950 5.03949 5.11293 5.22149 5.22971 5.40335 5.55337 5.71395 6.03956 6.78352 7.43333 8.39922 8.96674 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.050253 B = 0.017658 C = 0.013736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.042112 B = 1585.339596 C = 2037.959758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.131 3.869 5 H 0.055 0.945 6 C -0.126 4.126 7 C 0.084 3.916 8 N -0.654 5.654 9 C -0.273 4.273 10 H 0.050 0.950 11 C -0.097 4.097 12 N -0.977 5.977 13 Si 1.105 2.895 14 H -0.281 1.281 15 H -0.255 1.255 16 H -0.307 1.307 17 H 0.056 0.944 18 H 0.074 0.926 19 H 0.039 0.961 20 H 0.022 0.978 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 4.474 13.329 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.025 3.975 5 H 0.072 0.928 6 C -0.164 4.164 7 C -0.041 4.041 8 N -0.383 5.383 9 C -0.401 4.401 10 H 0.068 0.932 11 C -0.288 4.288 12 N -0.623 5.623 13 Si 0.932 3.068 14 H -0.208 1.208 15 H -0.180 1.180 16 H -0.235 1.235 17 H 0.075 0.925 18 H 0.093 0.907 19 H 0.059 0.941 20 H 0.041 0.959 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.751 4.644 12.384 13.247 hybrid contribution -1.596 -0.922 0.002 1.844 sum -2.347 3.721 12.386 13.144 Atomic orbital electron populations 1.21711 0.94599 1.01754 1.01884 1.21481 0.96771 0.97295 1.00451 1.21718 0.95179 0.96491 1.01369 1.22432 0.93918 0.95177 0.85950 0.92756 1.23446 0.97464 0.95949 0.99564 1.22901 0.93602 0.91410 0.96145 1.46558 1.30966 1.51782 1.08970 1.19997 1.02093 1.26298 0.91677 0.93168 1.27051 1.07856 1.02025 0.91834 1.71017 1.21548 1.47619 1.22164 0.83243 0.71811 0.75872 0.75905 1.20775 1.17951 1.23536 0.92479 0.90692 0.94137 0.95923 0.91426 0.88978 0.94365 0.89640 0.87574 0.92761 0.94053 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.22 15 2 C -0.12 -4.16 5.93 30.60 0.18 -3.98 15 3 C -0.11 -3.72 5.06 30.60 0.15 -3.56 15 4 C 0.13 4.90 3.99 41.79 0.17 5.06 15 5 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 6 C -0.13 -3.95 8.04 31.01 0.25 -3.70 15 7 C 0.08 3.40 5.61 83.26 0.47 3.87 15 8 N -0.65 -32.09 3.49 -713.42 -2.49 -34.58 15 9 C -0.27 -16.23 10.69 84.03 0.90 -15.34 15 10 H 0.05 3.24 6.80 -2.91 -0.02 3.22 15 11 C -0.10 -6.01 5.50 84.86 0.47 -5.54 15 12 N -0.98 -65.46 13.70 21.65 0.30 -65.17 15 13 Si 1.11 55.42 25.50 68.60 1.75 57.17 15 14 H -0.28 -13.27 6.96 99.48 0.69 -12.58 15 15 H -0.25 -11.41 5.66 99.48 0.56 -10.85 15 16 H -0.31 -15.70 7.11 99.48 0.71 -14.99 15 17 H 0.06 1.45 8.14 -2.38 -0.02 1.43 15 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.02 0.96 6.71 -2.39 -0.02 0.94 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.04 1.50 8.14 -2.39 -0.02 1.49 15 24 H 0.09 2.63 8.12 -2.38 -0.02 2.61 15 25 H 0.11 2.44 8.14 -2.38 -0.02 2.42 15 26 H 0.05 2.09 7.02 -2.39 -0.02 2.07 15 27 H 0.04 1.74 6.21 -2.39 -0.01 1.73 15 28 H 0.24 16.37 8.73 -92.71 -0.81 15.56 15 Total: -1.00 -70.51 225.87 3.76 -66.75 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 0.91 Total: 2.23 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.30 Total: -26.40 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -2.19 Total: -99.75 kcal Atomic # 14 Polarization: 55.42 SS G_CDS: 1.75 Total: 57.17 kcal Total: -70.51 3.76 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.642 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds