Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46775 * 2 1 4 4 C 1.52999 * 109.47459 * 119.99186 * 2 1 3 5 5 H 1.09002 * 115.56437 * 325.70054 * 4 2 1 6 6 C 1.53079 * 117.51101 * 111.39205 * 4 2 1 7 7 C 1.53000 * 117.49918 * 180.02562 * 4 2 1 8 8 H 1.08999 * 117.49550 * 145.00646 * 7 4 2 9 9 N 1.46499 * 117.49897 * 0.02562 * 7 4 2 10 10 C 1.36939 * 119.99933 * 155.36262 * 9 7 4 11 11 H 1.08001 * 119.99700 * 359.72658 * 10 9 7 12 12 C 1.38810 * 120.00095 * 179.71972 * 10 9 7 13 13 N 1.31624 * 119.99740 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47173 * 60.00435 * 14 12 10 16 16 H 1.48497 * 109.47172 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47132 * 300.00314 * 14 12 10 18 18 H 1.09000 * 109.47131 * 299.99719 * 1 2 3 19 19 H 1.08993 * 109.47455 * 60.00316 * 1 2 3 20 20 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47429 * 239.99960 * 2 1 3 22 22 H 1.09003 * 109.46997 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46701 * 299.99956 * 3 2 1 24 24 H 1.08994 * 109.47174 * 59.99804 * 3 2 1 25 25 H 1.09000 * 117.50899 * 0.02562 * 6 4 2 26 26 H 1.08993 * 117.49528 * 214.96190 * 6 4 2 27 27 H 0.97001 * 119.99790 * 335.08235 * 9 7 4 28 28 H 0.96998 * 119.99409 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.4310 -0.5982 2.1449 6 6 2.7427 -2.0666 1.0518 7 6 3.5551 -0.8273 1.4346 8 1 3.9426 -0.7742 2.4520 9 7 4.4063 -0.2303 0.4025 10 6 5.6812 0.1637 0.7100 11 1 6.0576 0.0384 1.7145 12 6 6.4898 0.7240 -0.2693 13 7 6.0308 0.8770 -1.4934 14 14 8.2286 1.2621 0.1503 15 1 9.0064 0.0921 0.6314 16 1 8.8784 1.8250 -1.0605 17 1 8.1833 2.2976 1.2139 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 3.1300 1.4427 -0.0005 23 1 1.6765 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 2.8419 -2.4379 0.0317 26 1 2.5957 -2.8282 1.8175 27 1 4.0682 -0.1179 -0.4997 28 1 6.5958 1.2689 -2.1776 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885228530.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = 20.513316 kcal Electronic energy + Delta-G solvation = -9890.837886 eV Core-core repulsion = 8135.453252 eV Total energy + Delta-G solvation = -1755.384634 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.85244 -33.64811 -32.34406 -29.63091 -26.46754 -23.80759 -22.19596 -20.69893 -18.64973 -17.35757 -14.91389 -14.64726 -13.98654 -13.34532 -12.89708 -12.63122 -12.38104 -11.65247 -11.34629 -10.97979 -10.93025 -10.65559 -10.32732 -10.27224 -10.14833 -10.03054 -9.72698 -9.03621 -8.65476 -6.83391 -5.83169 -3.10336 3.42251 3.46709 3.47807 4.54189 4.77385 5.30068 5.52347 5.53949 5.62801 5.78528 5.99257 6.05264 6.17452 6.26358 6.34717 6.40075 6.51423 6.55934 6.62831 6.87960 6.95712 7.09263 7.36102 7.67196 8.35783 9.46482 10.03063 10.38013 11.38692 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070107 B = 0.012895 C = 0.011717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.291935 B = 2170.937220 C = 2389.119630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.157 4.157 4 C -0.189 4.189 5 H 0.088 0.912 6 C -0.232 4.232 7 C 0.149 3.851 8 H 0.099 0.901 9 N -0.684 5.684 10 C -0.249 4.249 11 H 0.074 0.926 12 C -0.010 4.010 13 N -0.930 5.930 14 Si 0.912 3.088 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.285 1.285 18 H 0.048 0.952 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.390 0.610 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -1.497 3.585 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.214 4.214 4 C -0.210 4.210 5 H 0.107 0.893 6 C -0.273 4.273 7 C 0.035 3.965 8 H 0.117 0.883 9 N -0.320 5.320 10 C -0.380 4.380 11 H 0.092 0.908 12 C -0.206 4.206 13 N -0.577 5.577 14 Si 0.742 3.258 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.211 1.211 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.115 0.885 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.226 0.774 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.930 -1.401 3.605 7.936 hybrid contribution 0.652 0.189 -0.157 0.696 sum -6.278 -1.212 3.448 7.264 Atomic orbital electron populations 1.21829 0.96505 1.00698 1.00790 1.20458 0.93903 0.96537 0.96475 1.22020 1.05370 0.94625 0.99408 1.22818 0.98950 1.00427 0.98807 0.89347 1.23664 1.10120 0.91864 1.01694 1.20989 0.86791 0.94949 0.93817 0.88318 1.42145 1.11730 1.69450 1.08625 1.19283 0.89285 1.33750 0.95726 0.90842 1.24786 0.98766 1.01523 0.95571 1.69660 1.36729 1.49735 1.01595 0.86204 0.84205 0.78422 0.76965 1.21151 1.21636 1.21117 0.93316 0.93424 0.93386 0.91876 0.88489 0.94305 0.94119 0.89901 0.90487 0.77387 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.18 37.16 0.34 -1.73 15 2 C -0.06 -0.99 2.44 -90.62 -0.22 -1.21 15 3 C -0.16 -3.01 8.86 37.16 0.33 -2.68 15 4 C -0.19 -3.42 5.15 -90.58 -0.47 -3.88 15 5 H 0.09 1.46 8.11 -51.93 -0.42 1.04 15 6 C -0.23 -4.31 10.11 -26.66 -0.27 -4.58 15 7 C 0.15 3.13 6.41 -67.90 -0.44 2.69 15 8 H 0.10 2.00 8.12 -51.93 -0.42 1.57 15 9 N -0.68 -17.33 3.83 -53.40 -0.20 -17.54 15 10 C -0.25 -6.91 9.98 -15.06 -0.15 -7.06 15 11 H 0.07 1.95 7.82 -52.49 -0.41 1.54 15 12 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 15 13 N -0.93 -27.73 13.06 55.49 0.72 -27.01 15 14 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 15 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.06 1.22 7.61 -51.93 -0.40 0.83 15 22 H 0.10 2.24 5.38 -51.93 -0.28 1.97 15 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.08 1.62 8.05 -51.93 -0.42 1.20 15 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 27 H 0.39 10.40 6.00 -40.82 -0.24 10.16 15 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 233.65 15.07 3.52 3.52 Total: -1.00 -28.48 233.65 -6.21 -34.70 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.26 Total: 8.01 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.97 Total: -18.83 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.52 Total: -44.54 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.48 -6.21 -34.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228530.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.209 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds