Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46775 * 2 1 4 4 C 1.52999 * 109.47459 * 119.99186 * 2 1 3 5 5 H 1.09002 * 115.56437 * 325.70054 * 4 2 1 6 6 C 1.53079 * 117.51101 * 111.39205 * 4 2 1 7 7 C 1.53000 * 117.49918 * 180.02562 * 4 2 1 8 8 H 1.08999 * 117.49550 * 145.00646 * 7 4 2 9 9 N 1.46499 * 117.49897 * 0.02562 * 7 4 2 10 10 C 1.36939 * 119.99933 * 155.36262 * 9 7 4 11 11 H 1.08001 * 119.99700 * 359.72658 * 10 9 7 12 12 C 1.38810 * 120.00095 * 179.71972 * 10 9 7 13 13 N 1.31624 * 119.99740 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47173 * 60.00435 * 14 12 10 16 16 H 1.48497 * 109.47172 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47132 * 300.00314 * 14 12 10 18 18 H 1.09000 * 109.47131 * 299.99719 * 1 2 3 19 19 H 1.08993 * 109.47455 * 60.00316 * 1 2 3 20 20 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47429 * 239.99960 * 2 1 3 22 22 H 1.09003 * 109.46997 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46701 * 299.99956 * 3 2 1 24 24 H 1.08994 * 109.47174 * 59.99804 * 3 2 1 25 25 H 1.09000 * 117.50899 * 0.02562 * 6 4 2 26 26 H 1.08993 * 117.49528 * 214.96190 * 6 4 2 27 27 H 0.97001 * 119.99790 * 335.08235 * 9 7 4 28 28 H 0.96998 * 119.99409 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.4310 -0.5982 2.1449 6 6 2.7427 -2.0666 1.0518 7 6 3.5551 -0.8273 1.4346 8 1 3.9426 -0.7742 2.4520 9 7 4.4063 -0.2303 0.4025 10 6 5.6812 0.1637 0.7100 11 1 6.0576 0.0384 1.7145 12 6 6.4898 0.7240 -0.2693 13 7 6.0308 0.8770 -1.4934 14 14 8.2286 1.2621 0.1503 15 1 9.0064 0.0921 0.6314 16 1 8.8784 1.8250 -1.0605 17 1 8.1833 2.2976 1.2139 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 3.1300 1.4427 -0.0005 23 1 1.6765 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 2.8419 -2.4379 0.0317 26 1 2.5957 -2.8282 1.8175 27 1 4.0682 -0.1179 -0.4997 28 1 6.5958 1.2689 -2.1776 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885228530.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = 3.978560 kcal Electronic energy + Delta-G solvation = -9891.554887 eV Core-core repulsion = 8135.453252 eV Total energy + Delta-G solvation = -1756.101634 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.43074 -35.49713 -33.98316 -31.59942 -27.85430 -25.85269 -23.65593 -22.32098 -20.18404 -19.37878 -16.75025 -16.29871 -15.75426 -14.92030 -14.56847 -14.32428 -13.81779 -13.07572 -12.95817 -12.85952 -12.76649 -12.21024 -12.11143 -11.97619 -11.78295 -11.75178 -11.39090 -10.65939 -10.53942 -8.77621 -7.96446 -5.23026 1.48269 1.51244 1.57453 2.55154 3.13794 3.50357 3.78016 3.97525 4.21731 4.33143 4.46798 4.63192 4.64718 4.85876 4.90825 5.04223 5.05767 5.16857 5.26255 5.33573 5.43565 5.52042 5.65193 5.75720 6.25574 7.31371 8.06544 8.30644 9.26364 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070107 B = 0.012895 C = 0.011717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.291935 B = 2170.937220 C = 2389.119630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.166 4.166 5 H 0.116 0.884 6 C -0.215 4.215 7 C 0.110 3.890 8 H 0.105 0.895 9 N -0.699 5.699 10 C -0.251 4.251 11 H 0.080 0.920 12 C -0.072 4.072 13 N -0.968 5.968 14 Si 0.977 3.023 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.277 1.277 18 H 0.062 0.938 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.379 0.621 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 -1.881 4.895 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 C -0.209 4.209 4 C -0.186 4.186 5 H 0.134 0.866 6 C -0.256 4.256 7 C -0.001 4.001 8 H 0.123 0.877 9 N -0.335 5.335 10 C -0.383 4.383 11 H 0.098 0.902 12 C -0.265 4.265 13 N -0.617 5.617 14 Si 0.806 3.194 15 H -0.204 1.204 16 H -0.222 1.222 17 H -0.203 1.203 18 H 0.082 0.918 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.213 0.787 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.015 -1.813 4.967 9.602 hybrid contribution 0.896 0.270 -0.513 1.067 sum -7.120 -1.543 4.454 8.539 Atomic orbital electron populations 1.21748 0.93373 1.01919 1.01985 1.20467 0.96440 0.95174 0.95482 1.21911 1.02564 0.96034 1.00370 1.22883 0.96571 0.99429 0.99767 0.86623 1.23618 1.08100 0.92138 1.01729 1.21280 0.88339 0.97308 0.93183 0.87748 1.42195 1.11684 1.70533 1.09043 1.19693 0.90319 1.32412 0.95865 0.90236 1.25592 1.02677 1.02618 0.95593 1.69823 1.37914 1.51470 1.02519 0.85158 0.79630 0.78143 0.76483 1.20379 1.22207 1.20265 0.91846 0.92595 0.92151 0.94150 0.92653 0.93710 0.92770 0.91298 0.87609 0.78685 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.18 71.98 0.66 -2.82 15 2 C -0.06 -1.95 2.44 -10.79 -0.03 -1.97 15 3 C -0.15 -5.72 8.86 71.99 0.64 -5.08 15 4 C -0.17 -5.60 5.15 -10.77 -0.06 -5.66 15 5 H 0.12 3.34 8.11 -2.39 -0.02 3.32 15 6 C -0.22 -7.53 10.11 30.64 0.31 -7.22 15 7 C 0.11 4.54 6.41 45.01 0.29 4.83 15 8 H 0.10 4.10 8.12 -2.39 -0.02 4.08 15 9 N -0.70 -35.91 3.83 -322.86 -1.24 -37.15 15 10 C -0.25 -14.05 9.98 84.03 0.84 -13.21 15 11 H 0.08 4.22 7.82 -2.91 -0.02 4.20 15 12 C -0.07 -4.15 5.50 84.86 0.47 -3.69 15 13 N -0.97 -59.28 13.06 21.65 0.28 -58.99 15 14 Si 0.98 46.08 29.55 68.60 2.03 48.11 15 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 16 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 18 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 19 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 21 H 0.04 1.56 7.61 -2.39 -0.02 1.54 15 22 H 0.05 2.60 5.38 -2.39 -0.01 2.59 15 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.07 2.62 8.05 -2.39 -0.02 2.60 15 26 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 27 H 0.38 20.86 6.00 -92.71 -0.56 20.30 15 28 H 0.25 15.01 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -61.14 233.65 4.76 -56.38 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.57 Total: 26.47 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 3.12 Total: -34.82 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -0.95 Total: -96.14 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -61.14 4.76 -56.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885228530.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.355 kcal (2) G-P(sol) polarization free energy of solvation -61.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds