Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46903 * 109.46940 * 2 1 4 4 C 1.48795 * 110.99693 * 189.99648 * 3 2 1 5 5 C 1.54902 * 102.10524 * 156.40594 * 4 3 2 6 6 N 1.47800 * 103.55345 * 323.55134 * 5 4 3 7 7 C 1.36932 * 126.41376 * 202.32615 * 6 5 4 8 8 H 1.08004 * 120.00093 * 180.02562 * 7 6 5 9 9 C 1.38813 * 120.00057 * 0.02562 * 7 6 5 10 10 N 1.31619 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47405 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47226 * 119.99994 * 11 9 7 14 14 H 1.48503 * 109.47300 * 239.99812 * 11 9 7 15 15 C 1.47106 * 107.15963 * 22.33153 * 6 5 4 16 16 H 1.09001 * 109.46664 * 300.00270 * 1 2 3 17 17 H 1.08995 * 109.46662 * 59.99916 * 1 2 3 18 18 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47387 * 239.99835 * 2 1 3 20 20 H 1.09004 * 109.46772 * 119.99895 * 2 1 3 21 21 H 1.09002 * 110.91328 * 274.61742 * 4 3 2 22 22 H 1.08997 * 110.91225 * 38.19563 * 4 3 2 23 23 H 1.08997 * 110.60317 * 82.04384 * 5 4 3 24 24 H 1.08997 * 110.60489 * 205.00336 * 5 4 3 25 25 H 0.97000 * 119.99786 * 179.97438 * 10 9 7 26 26 H 1.09002 * 109.77388 * 240.70778 * 15 6 5 27 27 H 1.08994 * 109.77952 * 119.93659 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4873 1.4317 -0.2411 5 6 3.6786 2.8619 -0.8045 6 7 2.4654 3.0779 -1.6207 7 6 2.3261 3.9710 -2.6492 8 1 1.3873 4.0433 -3.1782 9 6 3.3916 4.7834 -3.0121 10 7 4.5355 4.6956 -2.3672 11 14 3.2013 6.0022 -4.4148 12 1 1.8279 5.9061 -4.9714 13 1 3.4360 7.3788 -3.9098 14 1 4.1890 5.6904 -5.4790 15 6 1.4359 2.1537 -1.1208 16 1 -0.3633 0.5139 0.8900 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 1.8935 -0.5138 -0.8899 20 1 1.8934 -0.5138 0.8900 21 1 4.0389 1.3034 0.6902 22 1 3.7852 0.6819 -0.9740 23 1 3.7301 3.5895 0.0055 24 1 4.5732 2.9133 -1.4250 25 1 5.2802 5.2631 -2.6210 26 1 1.1335 1.4731 -1.9167 27 1 0.5721 2.7185 -0.7702 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019328713.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = 17.854150 kcal Electronic energy + Delta-G solvation = -10154.465400 eV Core-core repulsion = 8333.539545 eV Total energy + Delta-G solvation = -1820.925855 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.89843 -35.85880 -33.35127 -31.31786 -29.12099 -27.20522 -24.08952 -22.46050 -21.45961 -19.08082 -17.25067 -16.73369 -16.12438 -15.19059 -14.94773 -14.54907 -14.13342 -13.60801 -13.13390 -13.05160 -12.87320 -12.72336 -12.23053 -12.04187 -11.94845 -11.73940 -11.65441 -10.82915 -9.54573 -8.93763 -7.86044 -5.29946 1.46288 1.48185 1.58818 2.45353 3.05636 3.29742 3.65060 4.07174 4.18786 4.27352 4.41291 4.55334 4.62203 4.71059 4.88442 4.95827 5.07553 5.21413 5.39069 5.40876 5.58230 5.86900 6.11451 6.22477 7.03336 7.67456 8.36232 9.20591 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087622 B = 0.013128 C = 0.011712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.476681 B = 2132.278274 C = 2390.122456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 N -0.527 5.527 4 C 0.025 3.975 5 C 0.157 3.843 6 N -0.636 5.636 7 C -0.243 4.243 8 H 0.085 0.915 9 C -0.066 4.066 10 N -0.951 5.951 11 Si 0.989 3.011 12 H -0.265 1.265 13 H -0.290 1.290 14 H -0.288 1.288 15 C 0.294 3.706 16 H 0.061 0.939 17 H 0.043 0.957 18 H 0.084 0.916 19 H 0.030 0.970 20 H 0.094 0.906 21 H 0.100 0.900 22 H 0.044 0.956 23 H -0.005 1.005 24 H 0.073 0.927 25 H 0.250 0.750 26 H 0.009 0.991 27 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -7.879 2.872 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.253 5.253 4 C -0.103 4.103 5 C 0.032 3.968 6 N -0.364 5.364 7 C -0.372 4.372 8 H 0.102 0.898 9 C -0.259 4.259 10 N -0.600 5.600 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.217 1.217 14 H -0.215 1.215 15 C 0.079 3.921 16 H 0.080 0.920 17 H 0.062 0.938 18 H 0.103 0.897 19 H 0.049 0.951 20 H 0.113 0.887 21 H 0.118 0.882 22 H 0.062 0.938 23 H 0.013 0.987 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.773 -7.527 3.283 9.498 hybrid contribution 0.355 0.480 -1.350 1.476 sum -4.419 -7.047 1.933 8.539 Atomic orbital electron populations 1.21819 0.93672 1.02900 1.01979 1.22389 0.97156 0.87783 1.01362 1.65412 1.05315 1.13519 1.41058 1.23677 0.89089 0.97333 1.00231 1.21814 0.91469 0.91189 0.92291 1.45101 1.10533 1.43433 1.37313 1.19446 0.98352 1.12315 1.07084 0.89753 1.25742 0.95650 1.01911 1.02547 1.70066 1.03304 1.42696 1.43922 0.84863 0.77836 0.77759 0.77928 1.18916 1.21693 1.21474 1.21967 0.91230 0.90018 0.88854 0.91973 0.93772 0.89737 0.95131 0.88732 0.88190 0.93780 0.98706 0.90920 0.94033 0.97370 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.69 71.99 0.70 -2.95 15 2 C 0.04 1.20 5.66 86.31 0.49 1.69 15 3 N -0.53 -20.43 5.49 -895.49 -4.92 -25.35 15 4 C 0.02 1.00 6.75 86.59 0.58 1.59 15 5 C 0.16 8.24 6.06 86.78 0.53 8.76 15 6 N -0.64 -34.96 3.43 -702.68 -2.41 -37.37 15 7 C -0.24 -14.12 10.32 84.03 0.87 -13.25 15 8 H 0.08 4.66 7.83 -2.91 -0.02 4.64 15 9 C -0.07 -3.81 5.49 84.86 0.47 -3.34 15 10 N -0.95 -57.84 10.23 21.65 0.22 -57.61 15 11 Si 0.99 46.11 29.55 68.60 2.03 48.14 15 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 15 14 H -0.29 -13.25 7.11 99.48 0.71 -12.55 15 15 C 0.29 13.30 5.87 170.18 1.00 14.30 15 16 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 17 H 0.04 1.21 6.66 -2.39 -0.02 1.20 15 18 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 19 H 0.03 0.90 7.88 -2.39 -0.02 0.89 15 20 H 0.09 2.33 8.14 -2.38 -0.02 2.31 15 21 H 0.10 3.47 8.14 -2.39 -0.02 3.45 15 22 H 0.04 1.72 7.82 -2.39 -0.02 1.70 15 23 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 15 24 H 0.07 4.20 6.12 -2.39 -0.01 4.19 15 25 H 0.25 14.61 8.31 -92.71 -0.77 13.83 15 26 H 0.01 0.39 7.09 -2.39 -0.02 0.37 15 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 Total: -1.00 -65.23 220.42 0.68 -64.56 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.13 Total: 0.85 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.63 Total: 6.79 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -7.11 Total: -120.33 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -65.23 0.68 -64.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019328713.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.411 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds