Wall clock time and date at job start Mon Mar 30 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.32879 * 305.69344 * 11 10 9 13 13 C 1.54483 * 110.36771 * 183.44995 * 11 10 9 14 14 C 1.54516 * 104.06141 * 217.18521 * 13 11 10 15 15 C 1.54485 * 104.06151 * 0.02562 * 14 13 11 16 16 O 1.44422 * 110.37588 * 67.94906 * 11 10 9 17 17 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 18 18 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 19 19 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 20 20 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 21 21 H 1.08991 * 110.51390 * 335.83130 * 13 11 10 22 22 H 1.08996 * 110.50964 * 98.40738 * 13 11 10 23 23 H 1.08994 * 110.51215 * 118.64184 * 14 13 11 24 24 H 1.08999 * 110.51081 * 241.22481 * 14 13 11 25 25 H 1.08992 * 110.37140 * 142.80830 * 15 14 13 26 26 H 1.08996 * 110.37048 * 265.03558 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.3678 -4.7223 0.8270 13 6 1.8135 -6.1680 0.0740 14 6 0.9905 -7.1098 -0.8333 15 6 -0.1587 -6.2187 -1.3550 16 8 0.3456 -4.8680 -1.2583 17 1 -0.4851 0.8400 0.0004 18 1 0.3555 -2.3881 0.0038 19 1 2.6807 -3.7122 -0.9000 20 1 2.6887 -3.7168 0.8799 21 1 2.8296 -6.0633 -0.3060 22 1 1.8263 -6.5373 1.0994 23 1 1.5998 -7.4705 -1.6620 24 1 0.5964 -7.9470 -0.2573 25 1 -0.3894 -6.4653 -2.3913 26 1 -1.0444 -6.3379 -0.7311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020055560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:57 Heat of formation + Delta-G solvation = -41.327714 kcal Electronic energy + Delta-G solvation = -9931.369682 eV Core-core repulsion = 8010.158847 eV Total energy + Delta-G solvation = -1921.210835 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.99161 -34.43686 -31.84409 -31.34369 -28.77135 -25.02421 -22.70754 -21.23158 -20.57268 -17.04490 -16.07909 -15.30478 -15.11473 -14.42884 -13.48950 -13.10880 -13.02376 -12.23696 -11.64756 -11.51751 -11.12396 -10.97338 -10.72015 -10.55690 -10.37381 -9.98016 -9.59560 -9.30613 -8.80397 -6.82578 -5.66931 -2.95508 3.50016 3.53449 3.55260 4.29063 4.66060 4.84513 4.96679 5.16987 5.38591 5.52776 5.65106 5.81546 5.86484 5.95286 6.04711 6.11875 6.22053 6.41445 6.64882 6.83154 7.35316 7.76188 8.51539 9.62529 10.21560 10.57372 11.56042 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.109209 B = 0.010091 C = 0.009553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.327314 B = 2773.994481 C = 2930.220105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.159 3.841 11 C 0.068 3.932 12 H 0.067 0.933 13 C -0.148 4.148 14 C -0.154 4.154 15 C 0.040 3.960 16 O -0.357 6.357 17 H 0.255 0.745 18 H 0.387 0.613 19 H 0.026 0.974 20 H 0.031 0.969 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -12.705 -0.179 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.032 3.968 11 C 0.010 3.990 12 H 0.085 0.915 13 C -0.187 4.187 14 C -0.192 4.192 15 C -0.037 4.037 16 O -0.276 6.276 17 H 0.065 0.935 18 H 0.221 0.779 19 H 0.044 0.956 20 H 0.048 0.952 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.857 -12.396 -0.334 12.539 hybrid contribution 0.153 0.688 0.128 0.716 sum 2.010 -11.708 -0.206 11.881 Atomic orbital electron populations 1.69671 1.05133 1.25647 1.57728 1.24749 0.95518 0.97663 1.03124 0.86246 0.78475 0.83533 0.77804 1.21283 1.21698 1.21302 1.19208 0.90981 0.84250 1.42699 0.91257 1.42300 1.06059 0.99716 1.89286 1.20738 0.92728 0.85032 0.98347 1.23303 0.93661 0.95008 0.87027 0.91483 1.22942 1.00395 0.95235 1.00094 1.22924 0.97892 0.98624 0.99747 1.23358 0.95831 0.83224 1.01285 1.89320 1.71356 1.27729 1.39180 0.93517 0.77932 0.95632 0.95160 0.90587 0.90823 0.91035 0.91051 0.89678 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.61 13.06 55.49 0.72 -28.88 15 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 15 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 15 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 7 C -0.24 -7.12 9.99 -15.06 -0.15 -7.27 15 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 15 9 N -0.73 -20.11 5.60 -59.91 -0.34 -20.45 15 10 C 0.16 3.50 5.87 -4.04 -0.02 3.48 15 11 C 0.07 1.25 3.31 -25.95 -0.09 1.16 15 12 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 13 C -0.15 -2.04 6.63 -25.16 -0.17 -2.20 15 14 C -0.15 -1.84 7.09 -25.16 -0.18 -2.02 15 15 C 0.04 0.57 7.63 37.94 0.29 0.86 15 16 O -0.36 -7.07 11.35 -35.23 -0.40 -7.47 15 17 H 0.26 7.77 8.31 -40.82 -0.34 7.43 15 18 H 0.39 11.32 7.67 -40.82 -0.31 11.00 15 19 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.08 1.02 7.87 -51.93 -0.41 0.61 15 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 15 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 LS Contribution 223.71 15.07 3.37 3.37 Total: -1.00 -32.80 223.71 -5.72 -38.53 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.65 Total: 3.28 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.41 Total: -6.53 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.39 Total: -49.33 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.40 Total: -7.47 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.80 -5.72 -38.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.800 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds