Wall clock time and date at job start Mon Mar 30 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.32879 * 305.69344 * 11 10 9 13 13 C 1.54483 * 110.36771 * 183.44995 * 11 10 9 14 14 C 1.54516 * 104.06141 * 217.18521 * 13 11 10 15 15 C 1.54485 * 104.06151 * 0.02562 * 14 13 11 16 16 O 1.44422 * 110.37588 * 67.94906 * 11 10 9 17 17 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 18 18 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 19 19 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 20 20 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 21 21 H 1.08991 * 110.51390 * 335.83130 * 13 11 10 22 22 H 1.08996 * 110.50964 * 98.40738 * 13 11 10 23 23 H 1.08994 * 110.51215 * 118.64184 * 14 13 11 24 24 H 1.08999 * 110.51081 * 241.22481 * 14 13 11 25 25 H 1.08992 * 110.37140 * 142.80830 * 15 14 13 26 26 H 1.08996 * 110.37048 * 265.03558 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.3678 -4.7223 0.8270 13 6 1.8135 -6.1680 0.0740 14 6 0.9905 -7.1098 -0.8333 15 6 -0.1587 -6.2187 -1.3550 16 8 0.3456 -4.8680 -1.2583 17 1 -0.4851 0.8400 0.0004 18 1 0.3555 -2.3881 0.0038 19 1 2.6807 -3.7122 -0.9000 20 1 2.6887 -3.7168 0.8799 21 1 2.8296 -6.0633 -0.3060 22 1 1.8263 -6.5373 1.0994 23 1 1.5998 -7.4705 -1.6620 24 1 0.5964 -7.9470 -0.2573 25 1 -0.3894 -6.4653 -2.3913 26 1 -1.0444 -6.3379 -0.7311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020055560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:57 Heat of formation + Delta-G solvation = -65.349582 kcal Electronic energy + Delta-G solvation = -9932.411348 eV Core-core repulsion = 8010.158847 eV Total energy + Delta-G solvation = -1922.252501 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.29560 -36.45723 -33.52404 -32.88118 -30.43110 -26.79173 -24.52340 -22.59310 -21.90318 -19.20084 -17.39505 -16.81157 -16.45996 -16.32237 -15.15398 -14.95163 -14.50400 -13.94763 -13.16646 -13.02136 -12.74054 -12.57198 -12.27004 -12.09644 -12.04060 -11.62264 -11.41828 -10.97915 -10.66182 -9.03221 -7.95407 -5.25999 1.46284 1.51313 1.57435 2.55761 3.04537 3.38117 3.72284 3.76884 4.06281 4.14453 4.31920 4.42240 4.65028 4.70639 4.83238 4.93490 4.96781 5.10526 5.18660 5.25328 5.45621 6.04998 6.25728 7.31087 8.06292 8.30838 9.28562 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.109209 B = 0.010091 C = 0.009553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.327314 B = 2773.994481 C = 2930.220105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.078 0.922 9 N -0.746 5.746 10 C 0.155 3.845 11 C 0.068 3.932 12 H 0.060 0.940 13 C -0.141 4.141 14 C -0.143 4.143 15 C 0.029 3.971 16 O -0.402 6.402 17 H 0.252 0.748 18 H 0.373 0.627 19 H 0.019 0.981 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -13.785 0.003 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.810 3.190 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.386 4.386 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.078 0.922 13 C -0.179 4.179 14 C -0.181 4.181 15 C -0.047 4.047 16 O -0.321 6.321 17 H 0.061 0.939 18 H 0.204 0.796 19 H 0.037 0.963 20 H 0.062 0.938 21 H 0.097 0.903 22 H 0.115 0.885 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.919 -13.521 -0.150 13.833 hybrid contribution -0.177 0.949 0.049 0.967 sum 2.742 -12.572 -0.101 12.868 Atomic orbital electron populations 1.69852 1.06904 1.26300 1.59260 1.25698 0.96478 1.01502 1.03353 0.85091 0.77119 0.78451 0.78349 1.20325 1.21937 1.19894 1.19689 0.91632 0.85412 1.41824 0.90396 1.42549 1.05667 1.01249 1.89383 1.20946 0.93536 0.84391 0.98303 1.23243 0.93232 0.95958 0.86578 0.92229 1.22924 1.00097 0.92749 1.02121 1.22912 0.96698 0.98436 1.00044 1.23669 0.97015 0.81342 1.02700 1.89266 1.72040 1.31195 1.39639 0.93900 0.79554 0.96283 0.93759 0.90264 0.88473 0.89817 0.88108 0.88305 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.84 13.06 21.65 0.28 -62.55 15 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 15 3 Si 0.98 47.77 29.55 68.60 2.03 49.79 15 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 15 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 7 C -0.25 -15.15 9.99 84.03 0.84 -14.31 15 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 15 9 N -0.75 -41.82 5.60 -343.46 -1.92 -43.74 15 10 C 0.15 6.79 5.87 86.38 0.51 7.29 15 11 C 0.07 2.44 3.31 31.10 0.10 2.54 15 12 H 0.06 2.20 8.14 -2.38 -0.02 2.18 15 13 C -0.14 -3.49 6.63 31.61 0.21 -3.28 15 14 C -0.14 -2.94 7.09 31.61 0.22 -2.71 15 15 C 0.03 0.77 7.63 72.49 0.55 1.33 15 16 O -0.40 -15.83 11.35 -148.98 -1.69 -17.52 15 17 H 0.25 15.65 8.31 -92.71 -0.77 14.88 15 18 H 0.37 22.51 7.67 -92.70 -0.71 21.80 15 19 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.08 1.91 7.87 -2.39 -0.02 1.90 15 22 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 Total: -1.00 -70.68 223.71 2.04 -68.64 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.44 Total: 18.80 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 2.90 Total: -13.42 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -1.64 Total: -106.29 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.69 Total: -17.52 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -70.68 2.04 -68.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.292 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds