Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.86469 * 58.99120 * 11 10 9 13 13 C 1.54095 * 109.88383 * 180.02562 * 11 10 9 14 14 C 1.54811 * 104.18791 * 121.45442 * 13 11 10 15 15 C 1.54995 * 102.09311 * 20.88629 * 14 13 11 16 16 O 1.43742 * 109.88128 * 297.83888 * 11 10 9 17 17 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 18 18 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 19 19 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 20 20 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 21 21 H 1.09000 * 110.48786 * 240.13496 * 13 11 10 22 22 H 1.09003 * 110.48483 * 2.64741 * 13 11 10 23 23 H 1.09000 * 110.90490 * 139.07784 * 14 13 11 24 24 H 1.08995 * 110.91119 * 262.68186 * 14 13 11 25 25 H 1.09002 * 110.62172 * 81.47004 * 15 14 13 26 26 H 1.08994 * 110.62204 * 204.31668 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4216 -4.7583 -0.8773 13 6 1.8250 -6.1597 0.0018 14 6 1.3314 -6.8757 1.2826 15 6 -0.0083 -6.1492 1.5649 16 8 0.2671 -4.7808 1.1968 17 1 -0.4850 0.8401 0.0004 18 1 0.3557 -2.3880 0.0005 19 1 2.6849 -3.7145 -0.8894 20 1 2.6848 -3.7144 0.8905 21 1 1.5713 -6.7429 -0.8833 22 1 2.9004 -5.9876 0.0489 23 1 1.1666 -7.9369 1.0959 24 1 2.0330 -6.7311 2.1041 25 1 -0.8058 -6.5604 0.9460 26 1 -0.2683 -6.2201 2.6210 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020055562.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = -64.980162 kcal Electronic energy + Delta-G solvation = -9960.195034 eV Core-core repulsion = 8037.958552 eV Total energy + Delta-G solvation = -1922.236482 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.33284 -36.42833 -33.52977 -32.88175 -30.42852 -26.75466 -24.46873 -22.68976 -21.89678 -19.18240 -17.39160 -16.88740 -16.41681 -16.30426 -15.14064 -14.92893 -14.44304 -13.90648 -13.18164 -13.11609 -12.73978 -12.52941 -12.27383 -12.09806 -11.99183 -11.68965 -11.44421 -10.97119 -10.55499 -9.02060 -7.94801 -5.25313 1.46036 1.51161 1.57322 2.55886 3.02512 3.38108 3.71309 3.80781 4.04427 4.14995 4.32395 4.43140 4.62930 4.78083 4.83239 4.90756 4.94922 5.11399 5.20566 5.28085 5.45295 6.13072 6.27008 7.31664 8.08036 8.32322 9.29162 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.104310 B = 0.010294 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 268.367216 B = 2719.419366 C = 2864.507981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.982 3.018 4 H -0.293 1.293 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.151 3.849 11 C 0.069 3.931 12 H 0.058 0.942 13 C -0.141 4.141 14 C -0.144 4.144 15 C 0.031 3.969 16 O -0.403 6.403 17 H 0.252 0.748 18 H 0.373 0.627 19 H 0.041 0.959 20 H 0.018 0.982 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -13.853 0.787 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.810 3.190 4 H -0.219 1.219 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.386 4.386 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.024 3.976 11 C 0.011 3.989 12 H 0.075 0.925 13 C -0.179 4.179 14 C -0.181 4.181 15 C -0.045 4.045 16 O -0.323 6.323 17 H 0.061 0.939 18 H 0.205 0.795 19 H 0.059 0.941 20 H 0.036 0.964 21 H 0.115 0.885 22 H 0.103 0.897 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.385 -13.572 0.891 14.016 hybrid contribution -0.129 0.955 -0.066 0.966 sum 3.256 -12.617 0.825 13.056 Atomic orbital electron populations 1.69862 1.06909 1.26266 1.59284 1.25703 0.96480 1.01510 1.03404 0.85089 0.77112 0.78456 0.78342 1.21931 1.20297 1.19928 1.19694 0.91605 0.85471 1.41785 0.90442 1.42534 1.05706 1.01222 1.89302 1.21089 0.93634 0.84774 0.98069 1.22988 0.92147 0.95979 0.87770 0.92452 1.22939 1.01295 0.93688 0.99994 1.23107 0.96492 1.01122 0.97398 1.23810 0.97749 0.81339 1.01601 1.89007 1.71938 1.27437 1.43886 0.93922 0.79512 0.94146 0.96375 0.88505 0.89715 0.87318 0.90671 0.91368 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.18 13.06 21.65 0.28 -62.90 15 2 C -0.08 -4.80 5.50 84.86 0.47 -4.34 15 3 Si 0.98 47.94 29.55 68.60 2.03 49.97 15 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 15 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 7 C -0.25 -15.23 9.99 84.03 0.84 -14.39 15 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 15 9 N -0.75 -42.06 5.52 -343.47 -1.90 -43.96 15 10 C 0.15 6.64 5.73 86.38 0.50 7.14 15 11 C 0.07 2.49 3.49 30.97 0.11 2.60 15 12 H 0.06 2.12 8.14 -2.38 -0.02 2.11 15 13 C -0.14 -3.45 6.64 31.58 0.21 -3.24 15 14 C -0.14 -3.01 7.15 31.89 0.23 -2.79 15 15 C 0.03 0.82 7.72 72.66 0.56 1.39 15 16 O -0.40 -16.00 11.04 -148.98 -1.65 -17.64 15 17 H 0.25 15.72 8.31 -92.71 -0.77 14.95 15 18 H 0.37 22.76 7.62 -92.71 -0.71 22.05 15 19 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 20 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.08 1.97 7.70 -2.39 -0.02 1.95 15 23 H 0.11 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 Total: -1.00 -71.37 223.32 2.12 -69.25 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.45 Total: 18.90 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 2.91 Total: -13.63 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -1.61 Total: -106.85 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.65 Total: -17.64 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -71.37 2.12 -69.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020055562.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.268 kcal (2) G-P(sol) polarization free energy of solvation -71.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds