Wall clock time and date at job start Mon Mar 30 2020 01:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46951 * 111.00434 * 2 1 4 4 C 1.53055 * 109.36857 * 176.81185 * 3 2 1 5 5 N 1.46953 * 109.36011 * 58.40005 * 4 3 2 6 6 C 1.46953 * 110.88677 * 300.68108 * 5 4 3 7 7 H 1.09003 * 109.50504 * 299.34440 * 6 5 4 8 8 C 1.50694 * 109.49285 * 179.28863 * 6 5 4 9 9 H 1.08000 * 120.00563 * 240.10811 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.10974 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.46958 * 110.99860 * 236.19924 * 2 1 3 17 17 H 1.09003 * 109.47067 * 183.79789 * 1 2 3 18 18 H 1.08999 * 109.46872 * 303.79993 * 1 2 3 19 19 H 1.08996 * 109.47423 * 63.79885 * 1 2 3 20 20 H 1.09000 * 109.49077 * 296.78007 * 3 2 1 21 21 H 1.09004 * 109.49044 * 56.82151 * 3 2 1 22 22 H 1.09001 * 109.48826 * 178.36776 * 4 3 2 23 23 H 1.08997 * 109.48616 * 298.41193 * 4 3 2 24 24 H 1.00902 * 110.99581 * 176.81362 * 5 4 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 26 26 H 1.08999 * 109.48984 * 63.22177 * 16 2 1 27 27 H 1.09001 * 109.49012 * 303.15496 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0500 0.5657 -1.0598 6 6 3.5234 -0.8062 -1.0599 7 1 3.8253 -1.3120 -0.1427 8 6 4.0685 -1.5540 -2.2492 9 1 3.3933 -1.9584 -2.9887 10 6 5.4295 -1.7219 -2.3933 11 7 6.2518 -1.2291 -1.4931 12 14 6.1051 -2.6495 -3.8673 13 1 7.5876 -2.6903 -3.7894 14 1 5.5707 -4.0349 -3.8677 15 1 5.6944 -1.9601 -5.1167 16 6 1.9956 -0.7632 -1.1401 17 1 -0.3633 -1.0254 0.0681 18 1 -0.3633 0.5717 0.8540 19 1 -0.3634 0.4537 -0.9220 20 1 1.6938 1.8773 -0.9173 21 1 1.6011 1.9130 0.8601 22 1 3.9179 2.3447 0.0512 23 1 3.8254 0.8482 1.0108 24 1 5.0591 0.5657 -1.0598 25 1 7.2092 -1.3476 -1.5943 26 1 1.6937 -0.2821 -2.0704 27 1 1.6012 -1.7790 -1.1110 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:02 Heat of formation + Delta-G solvation = -18.455410 kcal Electronic energy + Delta-G solvation = -10230.454492 eV Core-core repulsion = 8407.954137 eV Total energy + Delta-G solvation = -1822.500355 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.68611 -35.77876 -33.97111 -31.76282 -28.33599 -27.18235 -24.18750 -23.33968 -20.46148 -18.62099 -17.18961 -16.39837 -15.80495 -15.39090 -15.24485 -15.13975 -14.44114 -13.82210 -13.14339 -12.89589 -12.79771 -12.63185 -12.41903 -12.17496 -11.83491 -11.28523 -11.07737 -10.66559 -9.26944 -8.83948 -8.18791 -6.30794 1.43582 1.45991 1.53685 2.42150 3.07596 3.15042 3.97140 4.19275 4.28338 4.42232 4.54749 4.64294 4.70848 4.79207 4.87781 4.98020 5.03954 5.15503 5.41754 5.74435 5.98026 6.22481 6.28021 6.60317 6.93679 7.07347 7.41148 8.90963 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.077453 B = 0.014307 C = 0.012623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.422529 B = 1956.677891 C = 2217.628607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.565 5.565 3 C 0.067 3.933 4 C 0.050 3.950 5 N -0.695 5.695 6 C 0.218 3.782 7 H -0.039 1.039 8 C -0.534 4.534 9 H 0.058 0.942 10 C 0.019 3.981 11 N -0.925 5.925 12 Si 0.968 3.032 13 H -0.282 1.282 14 H -0.270 1.270 15 H -0.272 1.272 16 C 0.080 3.920 17 H 0.070 0.930 18 H 0.085 0.915 19 H 0.024 0.976 20 H 0.031 0.969 21 H 0.097 0.903 22 H 0.081 0.919 23 H 0.007 0.993 24 H 0.349 0.651 25 H 0.267 0.733 26 H 0.021 0.979 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 3.221 1.492 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.290 5.290 3 C -0.061 4.061 4 C -0.080 4.080 5 N -0.331 5.331 6 C 0.109 3.891 7 H -0.022 1.022 8 C -0.573 4.573 9 H 0.076 0.924 10 C -0.180 4.180 11 N -0.565 5.565 12 Si 0.793 3.207 13 H -0.207 1.207 14 H -0.195 1.195 15 H -0.197 1.197 16 C -0.048 4.048 17 H 0.089 0.911 18 H 0.103 0.897 19 H 0.043 0.957 20 H 0.049 0.951 21 H 0.115 0.885 22 H 0.099 0.901 23 H 0.025 0.975 24 H 0.170 0.830 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.129 3.244 1.537 7.981 hybrid contribution 0.881 -0.504 -0.585 1.172 sum -6.247 2.740 0.952 6.888 Atomic orbital electron populations 1.22397 0.86042 1.02641 1.00938 1.62176 1.09008 1.14344 1.43467 1.22127 0.94353 0.88995 1.00672 1.22043 0.95409 0.98281 0.92270 1.60986 1.15242 1.15635 1.41207 1.18939 0.90219 0.86168 0.93738 1.02161 1.21427 0.92528 1.34459 1.08895 0.92361 1.25816 0.97153 0.95983 0.99046 1.69797 1.03518 1.46979 1.36231 0.85460 0.76959 0.78935 0.79306 1.20713 1.19521 1.19680 1.22054 0.95821 0.96721 0.90215 0.91136 0.89675 0.95723 0.95075 0.88512 0.90076 0.97474 0.83008 0.92426 0.96109 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.60 127.69 1.23 2.02 15 2 N -0.57 -21.84 4.97 -921.95 -4.58 -26.42 15 3 C 0.07 2.40 5.62 86.31 0.49 2.88 15 4 C 0.05 2.10 6.72 86.31 0.58 2.68 15 5 N -0.70 -35.56 6.53 -495.02 -3.23 -38.79 15 6 C 0.22 11.77 2.55 44.17 0.11 11.88 15 7 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 15 8 C -0.53 -30.46 8.76 25.60 0.22 -30.23 15 9 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 10 C 0.02 1.07 5.35 84.66 0.45 1.53 15 11 N -0.93 -53.56 11.50 21.45 0.25 -53.31 15 12 Si 0.97 43.92 29.54 68.60 2.03 45.94 15 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 16 C 0.08 3.65 4.84 86.31 0.42 4.06 15 17 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 18 H 0.08 2.02 8.13 -2.39 -0.02 2.00 15 19 H 0.02 0.68 8.14 -2.39 -0.02 0.66 15 20 H 0.03 1.13 8.14 -2.39 -0.02 1.11 15 21 H 0.10 2.80 8.13 -2.38 -0.02 2.78 15 22 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 23 H 0.01 0.31 8.14 -2.39 -0.02 0.29 15 24 H 0.35 19.27 6.72 -89.69 -0.60 18.67 15 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 15 Total: -1.00 -61.78 221.47 -1.51 -63.28 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.53 Total: 14.48 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 3.50 Total: -5.18 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -7.56 Total: -118.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.78 -1.51 -63.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.830 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds