Wall clock time and date at job start Mon Mar 30 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46955 * 110.99929 * 2 1 4 4 C 1.53044 * 109.36384 * 183.18578 * 3 2 1 5 5 N 1.46957 * 109.36768 * 301.59768 * 4 3 2 6 6 C 1.46955 * 110.87821 * 59.32067 * 5 4 3 7 7 H 1.09005 * 109.50736 * 60.65780 * 6 5 4 8 8 C 1.50701 * 109.49271 * 180.71196 * 6 5 4 9 9 H 1.08002 * 119.99761 * 119.88662 * 8 6 5 10 10 C 1.37871 * 119.99694 * 300.17225 * 8 6 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 6 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 6 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.46953 * 110.99594 * 123.79684 * 2 1 3 17 17 H 1.08998 * 109.47156 * 296.20061 * 1 2 3 18 18 H 1.09003 * 109.46791 * 56.20087 * 1 2 3 19 19 H 1.09000 * 109.47101 * 176.19714 * 1 2 3 20 20 H 1.09005 * 109.49175 * 303.15676 * 3 2 1 21 21 H 1.09005 * 109.48907 * 63.19725 * 3 2 1 22 22 H 1.09000 * 109.49163 * 61.56648 * 4 3 2 23 23 H 1.09009 * 109.48842 * 181.60954 * 4 3 2 24 24 H 1.00898 * 111.00338 * 295.45899 * 5 4 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 26 26 H 1.09003 * 109.48795 * 56.85418 * 16 2 1 27 27 H 1.08997 * 109.51079 * 296.78908 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 -0.0802 5 7 4.0501 0.5659 1.0599 6 6 3.5235 -0.8060 1.0599 7 1 3.8254 -1.3118 0.1427 8 6 4.0686 -1.5539 2.2492 9 1 3.3932 -1.9583 2.9887 10 6 5.4297 -1.7168 2.3963 11 7 6.2521 -1.2244 1.4958 12 14 6.1059 -2.6371 3.8746 13 1 4.9817 -3.0876 4.7338 14 1 6.8794 -3.8172 3.4117 15 1 6.9942 -1.7377 4.6538 16 6 1.9956 -0.7632 1.1401 17 1 -0.3633 0.4537 0.9221 18 1 -0.3633 0.5717 -0.8540 19 1 -0.3633 -1.0254 -0.0682 20 1 1.6013 1.9129 -0.8603 21 1 1.6934 1.8775 0.9172 22 1 3.8254 0.8479 -1.0105 23 1 3.9177 2.3449 -0.0516 24 1 3.8464 1.0313 1.9316 25 1 7.2097 -1.3387 1.5995 26 1 1.6013 -1.7790 1.1110 27 1 1.6937 -0.2824 2.0706 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411766.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:03 Heat of formation + Delta-G solvation = -14.320451 kcal Electronic energy + Delta-G solvation = -10231.478993 eV Core-core repulsion = 8409.157943 eV Total energy + Delta-G solvation = -1822.321050 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.85745 -35.56341 -34.02711 -31.75077 -28.10063 -27.11275 -24.16000 -23.25069 -21.10567 -18.58976 -16.75954 -16.28217 -15.81586 -15.56012 -15.25360 -15.15181 -14.06269 -13.87215 -13.17030 -12.85273 -12.76887 -12.65102 -12.40615 -12.16110 -11.79516 -11.61882 -10.93369 -10.53302 -9.33184 -8.58344 -7.97350 -6.20226 1.44616 1.46203 1.57167 2.47086 3.08924 3.23885 3.92690 4.21215 4.24084 4.40344 4.47429 4.60063 4.65965 4.74771 4.84350 4.93720 5.04727 5.21016 5.47551 5.74112 6.07812 6.18867 6.27181 6.63378 7.09692 7.11612 7.52925 9.06679 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.077624 B = 0.014284 C = 0.012649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.626780 B = 1959.720927 C = 2213.038261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.026 3.974 4 C 0.058 3.942 5 N -0.670 5.670 6 C 0.228 3.772 7 H 0.002 0.998 8 C -0.558 4.558 9 H 0.052 0.948 10 C 0.034 3.966 11 N -0.881 5.881 12 Si 0.953 3.047 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.043 3.957 17 H 0.022 0.978 18 H 0.083 0.917 19 H 0.068 0.932 20 H 0.092 0.908 21 H 0.027 0.973 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.318 0.682 25 H 0.256 0.744 26 H 0.062 0.938 27 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 3.906 -0.901 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.104 4.104 4 C -0.072 4.072 5 N -0.298 5.298 6 C 0.120 3.880 7 H 0.020 0.980 8 C -0.597 4.597 9 H 0.070 0.930 10 C -0.170 4.170 11 N -0.516 5.516 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.087 4.087 17 H 0.041 0.959 18 H 0.101 0.899 19 H 0.087 0.913 20 H 0.110 0.890 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.135 0.865 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.016 3.529 -1.728 8.041 hybrid contribution -0.656 -0.008 1.647 1.773 sum -7.671 3.521 -0.081 8.441 Atomic orbital electron populations 1.22413 0.86426 1.02494 1.00731 1.62138 1.08710 1.14220 1.43445 1.22859 0.97905 0.88915 1.00683 1.22101 0.91197 0.98316 0.95610 1.60818 1.62185 1.03032 1.03760 1.18902 0.86622 0.86996 0.95511 0.98003 1.21312 0.92331 1.36809 1.09206 0.92973 1.25725 0.97428 0.95432 0.98411 1.70261 1.02491 1.43680 1.35198 0.85612 0.78291 0.78322 0.79872 1.19271 1.20731 1.20675 1.22754 0.99036 0.97136 0.89782 0.95931 0.89851 0.91302 0.88959 0.95510 0.93136 0.90017 0.86512 0.93508 0.91995 0.96547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.60 127.69 1.23 2.00 15 2 N -0.56 -20.93 4.97 -921.92 -4.58 -25.51 15 3 C 0.03 0.89 5.61 86.31 0.48 1.37 15 4 C 0.06 2.31 6.72 86.31 0.58 2.89 15 5 N -0.67 -32.74 5.87 -494.99 -2.90 -35.65 15 6 C 0.23 11.94 2.46 44.18 0.11 12.04 15 7 H 0.00 0.12 8.14 -2.38 -0.02 0.10 15 8 C -0.56 -31.32 8.69 25.60 0.22 -31.10 15 9 H 0.05 2.87 7.74 -2.91 -0.02 2.84 15 10 C 0.03 1.91 5.39 84.65 0.46 2.37 15 11 N -0.88 -52.54 12.77 21.45 0.27 -52.27 15 12 Si 0.95 43.98 29.54 68.60 2.03 46.00 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 15 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 16 C 0.04 1.87 4.84 86.31 0.42 2.28 15 17 H 0.02 0.61 8.14 -2.39 -0.02 0.59 15 18 H 0.08 1.98 8.13 -2.39 -0.02 1.96 15 19 H 0.07 1.87 8.14 -2.39 -0.02 1.86 15 20 H 0.09 2.60 8.13 -2.38 -0.02 2.58 15 21 H 0.03 0.89 8.14 -2.38 -0.02 0.87 15 22 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.08 2.82 8.14 -2.38 -0.02 2.80 15 24 H 0.32 15.16 8.79 -89.70 -0.79 14.37 15 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 26 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 15 Total: -1.00 -62.34 224.00 -1.34 -63.69 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.35 Total: 11.87 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 3.50 Total: -8.14 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -7.21 Total: -113.42 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -62.34 -1.34 -63.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411766.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds