Wall clock time and date at job start Mon Mar 30 2020 01:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46955 * 111.00028 * 2 1 4 4 C 1.53049 * 109.36348 * 183.18399 * 3 2 1 5 5 N 1.46955 * 109.36716 * 301.59809 * 4 3 2 6 6 C 1.46955 * 110.87898 * 59.32097 * 5 4 3 7 7 C 1.46961 * 110.99354 * 123.79697 * 2 1 3 8 8 H 1.09000 * 109.49163 * 296.79593 * 7 2 1 9 9 C 1.50695 * 109.48966 * 56.84831 * 7 2 1 10 10 H 1.08001 * 120.00233 * 359.97438 * 9 7 2 11 11 C 1.37879 * 120.00043 * 179.97438 * 9 7 2 12 12 N 1.31517 * 119.99536 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00242 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46916 * 59.99689 * 13 11 9 15 15 H 1.48493 * 109.47168 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46796 * 300.00055 * 13 11 9 17 17 H 1.09005 * 109.46324 * 56.05042 * 1 2 3 18 18 H 1.09002 * 109.47056 * 176.04651 * 1 2 3 19 19 H 1.08998 * 109.47410 * 296.04841 * 1 2 3 20 20 H 1.08994 * 109.48889 * 63.21824 * 3 2 1 21 21 H 1.09002 * 109.48895 * 303.15318 * 3 2 1 22 22 H 1.09002 * 109.49130 * 181.62942 * 4 3 2 23 23 H 1.09003 * 109.50672 * 61.57521 * 4 3 2 24 24 H 1.00901 * 111.00068 * 183.18488 * 5 4 3 25 25 H 1.09003 * 109.49158 * 60.64704 * 6 5 4 26 26 H 1.08998 * 109.49163 * 180.71634 * 6 5 4 27 27 H 0.97007 * 119.99445 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0501 0.5659 1.0599 6 6 3.5234 -0.8061 1.0599 7 6 1.9956 -0.7632 1.1402 8 1 1.6934 -0.2822 2.0705 9 6 1.4504 -2.1675 1.1000 10 1 0.7795 -2.4639 0.3072 11 6 1.8081 -3.0741 2.0753 12 7 2.6255 -2.7133 3.0404 13 14 1.1317 -4.8147 2.0259 14 1 1.5436 -5.4699 0.7585 15 1 1.6651 -5.5858 3.1774 16 1 -0.3507 -4.7720 2.1020 17 1 -0.3632 0.5740 -0.8526 18 1 -0.3633 -1.0252 -0.0709 19 1 -0.3634 0.4513 0.9232 20 1 1.6938 1.8773 0.9173 21 1 1.6014 1.9128 -0.8603 22 1 3.9179 2.3448 -0.0512 23 1 3.8258 0.8480 -1.0105 24 1 5.0591 0.5658 1.0599 25 1 3.8254 -1.3116 0.1426 26 1 3.9177 -1.3470 1.9202 27 1 2.8774 -3.3513 3.7264 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034411767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:00 Heat of formation + Delta-G solvation = 9.385977 kcal Electronic energy + Delta-G solvation = -10355.733669 eV Core-core repulsion = 8534.440607 eV Total energy + Delta-G solvation = -1821.293062 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.93479 -33.47014 -32.84073 -29.52647 -26.74666 -25.02334 -22.27656 -21.66980 -18.63703 -16.57347 -15.45649 -14.63412 -13.93140 -13.62196 -13.37862 -13.29438 -12.66500 -12.04348 -11.26846 -11.07311 -10.93524 -10.76285 -10.62195 -10.13787 -10.02799 -9.54207 -8.92842 -8.47258 -7.57847 -7.11537 -6.02545 -4.07719 3.31944 3.36300 3.39135 4.39977 5.09826 5.12423 5.34245 5.79090 5.92805 6.01946 6.22215 6.33184 6.42131 6.58789 6.77226 6.85232 6.99163 7.38990 7.62124 7.77792 7.92321 8.14731 8.23272 8.37744 8.64033 9.00080 9.57412 11.04226 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.061730 B = 0.017183 C = 0.014260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.477031 B = 1629.128266 C = 1963.050362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.057 3.943 4 C 0.063 3.937 5 N -0.698 5.698 6 C 0.067 3.933 7 C 0.221 3.779 8 H 0.007 0.993 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 H 0.041 0.959 18 H 0.075 0.925 19 H 0.012 0.988 20 H 0.027 0.973 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.027 0.973 24 H 0.325 0.675 25 H 0.012 0.988 26 H 0.107 0.893 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 4.336 -4.062 5.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.067 4.067 5 N -0.328 5.328 6 C -0.062 4.062 7 C 0.114 3.886 8 H 0.025 0.975 9 C -0.548 4.548 10 H 0.082 0.918 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 H 0.060 0.940 18 H 0.093 0.907 19 H 0.030 0.970 20 H 0.046 0.954 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.140 0.860 25 H 0.030 0.970 26 H 0.124 0.876 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.104 4.256 -3.878 5.758 hybrid contribution -0.060 -0.917 0.025 0.920 sum -0.164 3.339 -3.852 5.100 Atomic orbital electron populations 1.22155 0.88821 1.02076 0.97790 1.62242 1.06905 1.11011 1.46873 1.22039 0.94575 0.91539 0.99019 1.21876 0.95209 0.97113 0.92540 1.60725 1.11468 1.17665 1.42955 1.22313 0.97709 0.85418 1.00758 1.19259 0.90508 0.92522 0.86270 0.97507 1.21132 1.28220 0.95266 1.10203 0.91789 1.24976 0.95155 0.98857 0.95202 1.69882 1.34377 1.35164 1.13547 0.86552 0.79239 0.84117 0.77464 1.20229 1.21273 1.20268 0.93977 0.90665 0.96985 0.95435 0.92264 0.92125 0.95511 0.85966 0.96963 0.87555 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 9.26 60.07 0.56 1.39 15 2 N -0.54 -12.64 4.78 -236.12 -1.13 -13.77 15 3 C 0.06 1.14 5.62 -3.77 -0.02 1.12 15 4 C 0.06 1.18 6.72 -3.77 -0.03 1.16 15 5 N -0.70 -14.83 6.90 -113.63 -0.78 -15.61 15 6 C 0.07 1.67 5.76 -3.76 -0.02 1.65 15 7 C 0.22 5.86 1.95 -68.80 -0.13 5.73 15 8 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 15 9 C -0.51 -14.23 7.93 -34.44 -0.27 -14.50 15 10 H 0.06 1.77 6.45 -52.49 -0.34 1.43 15 11 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 12 N -0.89 -25.56 11.34 55.43 0.63 -24.93 15 13 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 17 H 0.04 0.74 8.13 -51.93 -0.42 0.32 15 18 H 0.07 1.63 6.29 -51.93 -0.33 1.30 15 19 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 1.02 8.13 -51.93 -0.42 0.60 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 15 24 H 0.32 5.99 8.90 -39.29 -0.35 5.64 15 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 26 H 0.11 2.91 6.12 -51.93 -0.32 2.59 15 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 217.60 15.07 3.28 3.28 Total: -1.00 -29.27 217.60 -6.89 -36.16 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.85 Total: 0.42 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.01 Total: -1.88 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.28 Total: -54.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.27 -6.89 -36.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds