Wall clock time and date at job start Mon Mar 30 2020 01:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46955 * 111.00028 * 2 1 4 4 C 1.53049 * 109.36348 * 183.18399 * 3 2 1 5 5 N 1.46955 * 109.36716 * 301.59809 * 4 3 2 6 6 C 1.46955 * 110.87898 * 59.32097 * 5 4 3 7 7 C 1.46961 * 110.99354 * 123.79697 * 2 1 3 8 8 H 1.09000 * 109.49163 * 296.79593 * 7 2 1 9 9 C 1.50695 * 109.48966 * 56.84831 * 7 2 1 10 10 H 1.08001 * 120.00233 * 359.97438 * 9 7 2 11 11 C 1.37879 * 120.00043 * 179.97438 * 9 7 2 12 12 N 1.31517 * 119.99536 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00242 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46916 * 59.99689 * 13 11 9 15 15 H 1.48493 * 109.47168 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46796 * 300.00055 * 13 11 9 17 17 H 1.09005 * 109.46324 * 56.05042 * 1 2 3 18 18 H 1.09002 * 109.47056 * 176.04651 * 1 2 3 19 19 H 1.08998 * 109.47410 * 296.04841 * 1 2 3 20 20 H 1.08994 * 109.48889 * 63.21824 * 3 2 1 21 21 H 1.09002 * 109.48895 * 303.15318 * 3 2 1 22 22 H 1.09002 * 109.49130 * 181.62942 * 4 3 2 23 23 H 1.09003 * 109.50672 * 61.57521 * 4 3 2 24 24 H 1.00901 * 111.00068 * 183.18488 * 5 4 3 25 25 H 1.09003 * 109.49158 * 60.64704 * 6 5 4 26 26 H 1.08998 * 109.49163 * 180.71634 * 6 5 4 27 27 H 0.97007 * 119.99445 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0501 0.5659 1.0599 6 6 3.5234 -0.8061 1.0599 7 6 1.9956 -0.7632 1.1402 8 1 1.6934 -0.2822 2.0705 9 6 1.4504 -2.1675 1.1000 10 1 0.7795 -2.4639 0.3072 11 6 1.8081 -3.0741 2.0753 12 7 2.6255 -2.7133 3.0404 13 14 1.1317 -4.8147 2.0259 14 1 1.5436 -5.4699 0.7585 15 1 1.6651 -5.5858 3.1774 16 1 -0.3507 -4.7720 2.1020 17 1 -0.3632 0.5740 -0.8526 18 1 -0.3633 -1.0252 -0.0709 19 1 -0.3634 0.4513 0.9232 20 1 1.6938 1.8773 0.9173 21 1 1.6014 1.9128 -0.8603 22 1 3.9179 2.3448 -0.0512 23 1 3.8258 0.8480 -1.0105 24 1 5.0591 0.5658 1.0599 25 1 3.8254 -1.3116 0.1426 26 1 3.9177 -1.3470 1.9202 27 1 2.8774 -3.3513 3.7264 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:00 Heat of formation + Delta-G solvation = -13.784365 kcal Electronic energy + Delta-G solvation = -10356.738410 eV Core-core repulsion = 8534.440607 eV Total energy + Delta-G solvation = -1822.297804 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.72535 -35.26085 -34.85017 -31.40912 -28.51908 -27.01496 -24.07539 -23.47810 -20.47237 -18.60881 -17.35493 -16.48057 -15.66279 -15.42916 -15.23515 -15.06645 -14.41350 -13.95410 -13.03579 -12.80833 -12.73346 -12.58696 -12.44025 -12.05854 -11.90858 -11.37576 -10.94054 -10.56900 -9.31415 -8.97283 -8.13898 -6.27586 1.42512 1.44535 1.52517 2.41080 3.11399 3.38749 3.56814 4.22976 4.38492 4.46479 4.62935 4.67374 4.75827 4.88441 4.99727 5.05346 5.15479 5.40489 5.61288 5.67119 6.05057 6.24826 6.33793 6.66474 6.74768 6.87659 7.42102 8.92057 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.061730 B = 0.017183 C = 0.014260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.477031 B = 1629.128266 C = 1963.050362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.556 5.556 3 C 0.052 3.948 4 C 0.062 3.938 5 N -0.704 5.704 6 C 0.081 3.919 7 C 0.226 3.774 8 H -0.039 1.039 9 C -0.530 4.530 10 H 0.061 0.939 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.271 1.271 17 H 0.080 0.920 18 H 0.060 0.940 19 H 0.004 0.996 20 H 0.016 0.984 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.030 0.970 24 H 0.341 0.659 25 H 0.000 1.000 26 H 0.078 0.922 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 4.723 -5.195 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.281 5.281 3 C -0.076 4.076 4 C -0.067 4.067 5 N -0.336 5.336 6 C -0.049 4.049 7 C 0.118 3.882 8 H -0.022 1.022 9 C -0.569 4.569 10 H 0.080 0.920 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.790 3.210 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.196 1.196 17 H 0.099 0.901 18 H 0.078 0.922 19 H 0.022 0.978 20 H 0.034 0.966 21 H 0.114 0.886 22 H 0.118 0.882 23 H 0.048 0.952 24 H 0.159 0.841 25 H 0.018 0.982 26 H 0.096 0.904 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.270 4.668 -5.026 6.865 hybrid contribution -0.008 -0.950 0.362 1.017 sum -0.278 3.718 -4.664 5.971 Atomic orbital electron populations 1.22179 0.87637 1.01814 0.99037 1.62233 1.08217 1.12869 1.44762 1.22236 0.95496 0.89829 1.00041 1.22023 0.94506 0.98712 0.91487 1.60613 1.12838 1.15452 1.44672 1.21906 0.96923 0.87305 0.98740 1.19035 0.91449 0.92142 0.85539 1.02172 1.21408 1.28616 0.96371 1.10457 0.92049 1.25796 0.95295 1.02877 0.94711 1.70023 1.35170 1.36465 1.14035 0.85509 0.78747 0.79102 0.77671 1.19574 1.20722 1.19563 0.90145 0.92159 0.97755 0.96562 0.88621 0.88190 0.95170 0.84096 0.98170 0.90394 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.26 127.69 1.18 2.86 15 2 N -0.56 -25.27 4.78 -900.94 -4.30 -29.58 15 3 C 0.05 1.97 5.62 86.31 0.49 2.45 15 4 C 0.06 2.17 6.72 86.31 0.58 2.75 15 5 N -0.70 -29.21 6.90 -513.42 -3.54 -32.75 15 6 C 0.08 4.11 5.76 86.31 0.50 4.61 15 7 C 0.23 12.19 1.95 44.18 0.09 12.27 15 8 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 15 9 C -0.53 -30.03 7.93 25.60 0.20 -29.83 15 10 H 0.06 3.43 6.45 -2.91 -0.02 3.41 15 11 C 0.01 0.70 5.30 84.65 0.45 1.15 15 12 N -0.92 -53.68 11.34 21.45 0.24 -53.43 15 13 Si 0.96 43.91 29.54 68.60 2.03 45.93 15 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 17 H 0.08 2.61 8.13 -2.38 -0.02 2.59 15 18 H 0.06 2.59 6.29 -2.39 -0.02 2.57 15 19 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 20 H 0.02 0.65 8.14 -2.39 -0.02 0.63 15 21 H 0.10 2.91 8.13 -2.39 -0.02 2.89 15 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.34 12.12 8.90 -89.69 -0.80 11.33 15 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 26 H 0.08 4.39 6.12 -2.39 -0.01 4.38 15 27 H 0.26 14.61 8.31 -92.70 -0.77 13.84 15 Total: -1.00 -63.05 217.60 -1.75 -64.80 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.35 Total: 8.75 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 3.48 Total: -3.73 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -7.60 Total: -115.76 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.05 -1.75 -64.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.018 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds