Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46957 * 111.00276 * 2 1 4 4 C 1.53052 * 109.36859 * 176.80833 * 3 2 1 5 5 N 1.46962 * 109.36129 * 58.39834 * 4 3 2 6 6 C 1.46958 * 110.89939 * 300.69362 * 5 4 3 7 7 C 1.46954 * 111.00595 * 236.19612 * 2 1 3 8 8 H 1.08999 * 109.48796 * 63.19641 * 7 2 1 9 9 C 1.50702 * 109.49007 * 303.16059 * 7 2 1 10 10 H 1.08008 * 119.99545 * 335.24635 * 9 7 2 11 11 C 1.37875 * 120.00447 * 155.24048 * 9 7 2 12 12 N 1.31511 * 119.99596 * 355.23201 * 11 9 7 13 13 Si 1.86800 * 120.00070 * 175.22648 * 11 9 7 14 14 H 1.48499 * 109.46957 * 60.00632 * 13 11 9 15 15 H 1.48498 * 109.46862 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46992 * 300.00286 * 13 11 9 17 17 H 1.08999 * 109.47308 * 183.80180 * 1 2 3 18 18 H 1.08998 * 109.47528 * 303.80634 * 1 2 3 19 19 H 1.09003 * 109.46667 * 63.80441 * 1 2 3 20 20 H 1.09000 * 109.48525 * 296.77769 * 3 2 1 21 21 H 1.09006 * 109.49088 * 56.83569 * 3 2 1 22 22 H 1.08996 * 109.48707 * 178.36656 * 4 3 2 23 23 H 1.08999 * 109.48656 * 298.43360 * 4 3 2 24 24 H 1.00904 * 110.99443 * 176.81010 * 5 4 3 25 25 H 1.08998 * 109.46827 * 299.33134 * 6 5 4 26 26 H 1.09002 * 109.50474 * 179.26774 * 6 5 4 27 27 H 0.97003 * 120.00583 * 5.25652 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 0.0804 5 7 4.0501 0.5658 -1.0597 6 6 3.5235 -0.8062 -1.0602 7 6 1.9957 -0.7632 -1.1400 8 1 1.6935 -0.2824 -2.0703 9 6 1.4505 -2.1676 -1.0998 10 1 1.1295 -2.5956 -0.1615 11 6 1.3614 -2.9061 -2.2607 12 7 1.6634 -2.3544 -3.4157 13 14 0.8119 -4.6901 -2.1929 14 1 -0.5535 -4.7659 -1.6140 15 1 0.8002 -5.2569 -3.5655 16 1 1.7528 -5.4660 -1.3455 17 1 -0.3634 -1.0254 0.0681 18 1 -0.3634 0.5718 0.8539 19 1 -0.3633 0.4537 -0.9222 20 1 1.6938 1.8773 -0.9174 21 1 1.6012 1.9129 0.8602 22 1 3.9178 2.3448 0.0513 23 1 3.8253 0.8480 1.0107 24 1 5.0592 0.5658 -1.0596 25 1 3.8257 -1.3116 -0.1430 26 1 3.9176 -1.3470 -1.9206 27 1 2.0213 -1.4532 -3.4440 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034411768.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = 3.412249 kcal Electronic energy + Delta-G solvation = -10367.567268 eV Core-core repulsion = 8546.015165 eV Total energy + Delta-G solvation = -1821.552102 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.12828 -33.69947 -32.95411 -29.55124 -26.75696 -24.66062 -22.47777 -21.83063 -18.99479 -16.95238 -15.44233 -14.55537 -14.02858 -13.75943 -13.65661 -13.44118 -12.84119 -11.60903 -11.57192 -11.18987 -11.07249 -10.84316 -10.41919 -10.22206 -10.05371 -9.83026 -8.57685 -8.39774 -7.82029 -7.23604 -6.35216 -4.08942 3.43633 3.45264 3.64387 4.50165 4.90932 4.98351 5.38049 5.64046 5.80047 5.88197 6.16322 6.23199 6.33218 6.46454 6.54434 6.61286 6.81208 7.04832 7.32249 7.57351 7.88656 7.97677 8.09439 8.41334 8.60509 8.87969 9.64745 11.01080 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.062819 B = 0.016671 C = 0.014502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.619511 B = 1679.197170 C = 1930.317916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.541 5.541 3 C 0.054 3.946 4 C 0.065 3.935 5 N -0.699 5.699 6 C 0.070 3.930 7 C 0.203 3.797 8 H 0.011 0.989 9 C -0.589 4.589 10 H 0.056 0.944 11 C 0.021 3.979 12 N -0.910 5.910 13 Si 1.070 2.930 14 H -0.288 1.288 15 H -0.283 1.283 16 H -0.287 1.287 17 H 0.078 0.922 18 H 0.041 0.959 19 H 0.010 0.990 20 H 0.027 0.973 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.029 0.971 24 H 0.326 0.674 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 4.068 5.308 6.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.266 5.266 3 C -0.075 4.075 4 C -0.065 4.065 5 N -0.330 5.330 6 C -0.059 4.059 7 C 0.096 3.904 8 H 0.029 0.971 9 C -0.628 4.628 10 H 0.075 0.925 11 C -0.184 4.184 12 N -0.546 5.546 13 Si 0.898 3.102 14 H -0.214 1.214 15 H -0.208 1.208 16 H -0.214 1.214 17 H 0.096 0.904 18 H 0.060 0.940 19 H 0.029 0.971 20 H 0.046 0.954 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.143 0.857 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.754 2.758 4.340 5.197 hybrid contribution 0.677 1.397 0.980 1.836 sum 1.431 4.155 5.320 6.900 Atomic orbital electron populations 1.22078 0.88291 1.02357 0.97582 1.62212 1.07344 1.10645 1.46413 1.22083 0.94403 0.91799 0.99214 1.21869 0.95320 0.97139 0.92193 1.60696 1.11660 1.16928 1.43666 1.22339 0.98220 0.86010 0.99376 1.19446 0.89739 0.93880 0.87308 0.97107 1.21847 1.46259 0.97996 0.96672 0.92536 1.25864 0.95191 1.05363 0.92030 1.70773 1.40536 1.17204 1.26067 0.83532 0.76285 0.74561 0.75823 1.21444 1.20822 1.21373 0.90351 0.94010 0.97122 0.95434 0.92024 0.91768 0.95250 0.85747 0.95774 0.91353 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 9.27 60.06 0.56 1.53 15 2 N -0.54 -12.54 4.78 -236.13 -1.13 -13.66 15 3 C 0.05 1.07 5.62 -3.77 -0.02 1.04 15 4 C 0.06 1.18 6.72 -3.76 -0.03 1.15 15 5 N -0.70 -14.09 6.90 -113.64 -0.78 -14.87 15 6 C 0.07 1.66 5.99 -3.77 -0.02 1.64 15 7 C 0.20 5.31 1.67 -68.81 -0.11 5.20 15 8 H 0.01 0.33 6.68 -51.93 -0.35 -0.02 15 9 C -0.59 -16.53 7.11 -34.44 -0.24 -16.78 15 10 H 0.06 1.61 7.53 -52.48 -0.39 1.22 15 11 C 0.02 0.58 5.45 -17.82 -0.10 0.49 15 12 N -0.91 -27.44 13.63 55.43 0.76 -26.68 15 13 Si 1.07 25.07 29.91 -169.99 -5.08 19.98 15 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 17 H 0.08 1.78 6.82 -51.93 -0.35 1.43 15 18 H 0.04 0.75 8.13 -51.93 -0.42 0.33 15 19 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 1.05 8.13 -51.93 -0.42 0.63 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.33 5.61 8.90 -39.29 -0.35 5.26 15 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.07 1.73 8.14 -51.93 -0.42 1.30 15 27 H 0.27 8.30 6.66 -40.82 -0.27 8.03 15 LS Contribution 220.05 15.07 3.32 3.32 Total: -1.00 -30.26 220.05 -6.79 -37.05 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.89 Total: 0.60 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 0.03 Total: -5.73 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.16 Total: -55.22 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.26 -6.79 -37.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411768.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.462 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds