Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46957 * 111.00276 * 2 1 4 4 C 1.53052 * 109.36859 * 176.80833 * 3 2 1 5 5 N 1.46962 * 109.36129 * 58.39834 * 4 3 2 6 6 C 1.46958 * 110.89939 * 300.69362 * 5 4 3 7 7 C 1.46954 * 111.00595 * 236.19612 * 2 1 3 8 8 H 1.08999 * 109.48796 * 63.19641 * 7 2 1 9 9 C 1.50702 * 109.49007 * 303.16059 * 7 2 1 10 10 H 1.08008 * 119.99545 * 335.24635 * 9 7 2 11 11 C 1.37875 * 120.00447 * 155.24048 * 9 7 2 12 12 N 1.31511 * 119.99596 * 355.23201 * 11 9 7 13 13 Si 1.86800 * 120.00070 * 175.22648 * 11 9 7 14 14 H 1.48499 * 109.46957 * 60.00632 * 13 11 9 15 15 H 1.48498 * 109.46862 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46992 * 300.00286 * 13 11 9 17 17 H 1.08999 * 109.47308 * 183.80180 * 1 2 3 18 18 H 1.08998 * 109.47528 * 303.80634 * 1 2 3 19 19 H 1.09003 * 109.46667 * 63.80441 * 1 2 3 20 20 H 1.09000 * 109.48525 * 296.77769 * 3 2 1 21 21 H 1.09006 * 109.49088 * 56.83569 * 3 2 1 22 22 H 1.08996 * 109.48707 * 178.36656 * 4 3 2 23 23 H 1.08999 * 109.48656 * 298.43360 * 4 3 2 24 24 H 1.00904 * 110.99443 * 176.81010 * 5 4 3 25 25 H 1.08998 * 109.46827 * 299.33134 * 6 5 4 26 26 H 1.09002 * 109.50474 * 179.26774 * 6 5 4 27 27 H 0.97003 * 120.00583 * 5.25652 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 0.0804 5 7 4.0501 0.5658 -1.0597 6 6 3.5235 -0.8062 -1.0602 7 6 1.9957 -0.7632 -1.1400 8 1 1.6935 -0.2824 -2.0703 9 6 1.4505 -2.1676 -1.0998 10 1 1.1295 -2.5956 -0.1615 11 6 1.3614 -2.9061 -2.2607 12 7 1.6634 -2.3544 -3.4157 13 14 0.8119 -4.6901 -2.1929 14 1 -0.5535 -4.7659 -1.6140 15 1 0.8002 -5.2569 -3.5655 16 1 1.7528 -5.4660 -1.3455 17 1 -0.3634 -1.0254 0.0681 18 1 -0.3634 0.5718 0.8539 19 1 -0.3633 0.4537 -0.9222 20 1 1.6938 1.8773 -0.9174 21 1 1.6012 1.9129 0.8602 22 1 3.9178 2.3448 0.0513 23 1 3.8253 0.8480 1.0107 24 1 5.0592 0.5658 -1.0596 25 1 3.8257 -1.3116 -0.1430 26 1 3.9176 -1.3470 -1.9206 27 1 2.0213 -1.4532 -3.4440 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411768.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = -20.700250 kcal Electronic energy + Delta-G solvation = -10368.612864 eV Core-core repulsion = 8546.015165 eV Total energy + Delta-G solvation = -1822.597699 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.90830 -35.51984 -34.93902 -31.39680 -28.53117 -26.71218 -24.25804 -23.66690 -20.80555 -18.97788 -17.20468 -16.48428 -15.74388 -15.60275 -15.43108 -15.20429 -14.55431 -13.58261 -13.40764 -12.99379 -12.80901 -12.65278 -12.20356 -11.99965 -11.90793 -11.62070 -10.64347 -10.53554 -9.47424 -9.12277 -8.60923 -6.36185 1.53881 1.61446 1.81299 2.55827 3.09671 3.28514 3.39429 4.10003 4.26192 4.35922 4.46846 4.52779 4.62806 4.69745 4.82021 4.89636 5.04803 5.14188 5.33664 5.76139 5.94638 6.07675 6.35543 6.45468 6.56905 6.70860 7.46086 8.73918 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.062819 B = 0.016671 C = 0.014502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.619511 B = 1679.197170 C = 1930.317916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.550 5.550 3 C 0.049 3.951 4 C 0.065 3.935 5 N -0.704 5.704 6 C 0.084 3.916 7 C 0.205 3.795 8 H -0.031 1.031 9 C -0.595 4.595 10 H 0.050 0.950 11 C -0.028 4.028 12 N -0.935 5.935 13 Si 1.116 2.884 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.270 1.270 17 H 0.058 0.942 18 H 0.081 0.919 19 H -0.003 1.003 20 H 0.014 0.986 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.035 0.965 24 H 0.346 0.654 25 H 0.019 0.981 26 H 0.043 0.957 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 4.482 6.786 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.275 5.275 3 C -0.079 4.079 4 C -0.065 4.065 5 N -0.336 5.336 6 C -0.046 4.046 7 C 0.097 3.903 8 H -0.013 1.013 9 C -0.634 4.634 10 H 0.068 0.932 11 C -0.226 4.226 12 N -0.572 5.572 13 Si 0.938 3.062 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.195 1.195 17 H 0.077 0.923 18 H 0.100 0.900 19 H 0.016 0.984 20 H 0.032 0.968 21 H 0.115 0.885 22 H 0.122 0.878 23 H 0.053 0.947 24 H 0.164 0.836 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.941 3.206 5.848 6.735 hybrid contribution 0.622 1.377 0.575 1.617 sum 1.563 4.582 6.423 8.044 Atomic orbital electron populations 1.22086 0.87587 1.01726 0.98662 1.62202 1.08201 1.12730 1.44390 1.22288 0.95716 0.89831 1.00095 1.22013 0.94184 0.98870 0.91384 1.60573 1.13214 1.14634 1.45208 1.21924 0.96720 0.88028 0.97937 1.19289 0.91234 0.93121 0.86658 1.01292 1.22097 1.45865 0.99123 0.96335 0.93178 1.27300 0.94738 1.09043 0.91564 1.70904 1.42532 1.16672 1.27081 0.82945 0.77130 0.70071 0.76077 1.19614 1.21031 1.19481 0.92333 0.90003 0.98403 0.96767 0.88485 0.87815 0.94659 0.83554 0.96245 0.93803 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.00 9.27 127.69 1.18 3.18 15 2 N -0.55 -24.93 4.78 -900.99 -4.30 -29.23 15 3 C 0.05 1.81 5.62 86.31 0.49 2.30 15 4 C 0.06 2.14 6.72 86.31 0.58 2.73 15 5 N -0.70 -27.32 6.90 -513.44 -3.54 -30.87 15 6 C 0.08 4.02 5.99 86.31 0.52 4.53 15 7 C 0.20 10.85 1.67 44.17 0.07 10.92 15 8 H -0.03 -1.85 6.68 -2.39 -0.02 -1.87 15 9 C -0.60 -33.87 7.11 25.60 0.18 -33.68 15 10 H 0.05 2.86 7.53 -2.91 -0.02 2.84 15 11 C -0.03 -1.60 5.45 84.65 0.46 -1.14 15 12 N -0.93 -57.83 13.63 21.45 0.29 -57.54 15 13 Si 1.12 50.32 29.91 68.60 2.05 52.37 15 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 15 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 17 H 0.06 2.65 6.82 -2.39 -0.02 2.63 15 18 H 0.08 2.74 8.13 -2.39 -0.02 2.72 15 19 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 20 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 21 H 0.10 2.91 8.13 -2.38 -0.02 2.89 15 22 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 24 H 0.35 11.19 8.90 -89.69 -0.80 10.39 15 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 26 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.26 16.32 6.66 -92.71 -0.62 15.70 15 Total: -1.00 -65.67 220.05 -1.52 -67.19 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.50 Total: 9.23 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 3.48 Total: -11.16 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.55 Total: -117.64 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -65.67 -1.52 -67.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411768.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds