Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.71404 * 2 1 4 4 C 1.53291 * 109.68031 * 120.54135 * 2 1 3 5 5 O 1.42960 * 109.22220 * 172.02294 * 4 2 1 6 6 C 1.42962 * 114.16517 * 297.41429 * 5 4 2 7 7 C 1.53294 * 109.22247 * 62.58386 * 6 5 4 8 8 N 1.47152 * 108.38269 * 307.69760 * 7 6 5 9 9 C 1.36941 * 120.97993 * 230.51168 * 8 7 6 10 10 H 1.08000 * 119.99694 * 151.86062 * 9 8 7 11 11 C 1.38807 * 119.99920 * 331.85966 * 9 8 7 12 12 N 1.31623 * 120.00294 * 344.79910 * 11 9 8 13 13 Si 1.86802 * 119.99924 * 164.79490 * 11 9 8 14 14 H 1.48500 * 109.47160 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.46894 * 120.00067 * 13 11 9 16 16 H 1.48493 * 109.47443 * 239.99743 * 13 11 9 17 17 H 1.08994 * 109.47527 * 180.53130 * 1 2 3 18 18 H 1.09003 * 109.46786 * 300.53903 * 1 2 3 19 19 H 1.09002 * 109.47335 * 60.53150 * 1 2 3 20 20 H 1.09000 * 109.51114 * 291.94485 * 4 2 1 21 21 H 1.09008 * 109.51237 * 52.04476 * 4 2 1 22 22 H 1.09000 * 109.51291 * 302.65602 * 6 5 4 23 23 H 1.09004 * 109.51142 * 182.50837 * 6 5 4 24 24 H 1.08996 * 109.67961 * 67.41989 * 7 6 5 25 25 H 1.08999 * 109.67979 * 187.93515 * 7 6 5 26 26 H 0.97001 * 119.99933 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0260 0.0000 4 6 2.0462 -0.7335 1.2431 5 8 3.4635 -0.8912 1.1419 6 6 3.8858 -1.6897 0.0337 7 6 3.4638 -1.0052 -1.2714 8 7 2.0255 -0.7040 -1.1934 9 6 1.1735 -1.0677 -2.2019 10 1 0.1350 -1.2700 -1.9848 11 6 1.6445 -1.1763 -3.5031 12 7 2.8076 -0.6527 -3.8279 13 14 0.6277 -2.0658 -4.7933 14 1 -0.6305 -2.5593 -4.1781 15 1 0.3034 -1.1297 -5.8997 16 1 1.4018 -3.2147 -5.3280 17 1 -0.3634 -1.0275 0.0095 18 1 -0.3633 0.5222 0.8851 19 1 -0.3634 0.5056 -0.8947 20 1 1.8073 -0.1526 2.1340 21 1 1.5738 -1.7136 1.3100 22 1 3.4208 -2.6736 0.0958 23 1 4.9703 -1.7968 0.0545 24 1 4.0261 -0.0804 -1.3993 25 1 3.6550 -1.6706 -2.1133 26 1 3.1369 -0.7289 -4.7371 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035237082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -25.909650 kcal Electronic energy + Delta-G solvation = -10538.700346 eV Core-core repulsion = 8618.158089 eV Total energy + Delta-G solvation = -1920.542257 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.31112 -34.65970 -32.28483 -30.46500 -27.14307 -25.99326 -23.30487 -21.57049 -19.41165 -16.50983 -15.54153 -15.22670 -14.43279 -13.88228 -13.73850 -13.37490 -12.75904 -11.82104 -11.51693 -11.05825 -10.93900 -10.70718 -10.57456 -10.22527 -10.09914 -9.86916 -9.52209 -8.82702 -8.49723 -6.64042 -5.78111 -3.22655 3.35796 3.43453 3.45507 4.45775 4.65378 5.31279 5.39326 5.76741 5.92700 6.02709 6.20121 6.25967 6.27502 6.38696 6.45862 6.67479 6.95913 6.99306 7.21524 7.57994 7.79010 7.98843 8.41494 9.18435 9.82016 10.40668 11.30109 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.059650 B = 0.017964 C = 0.015096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.295926 B = 1558.304865 C = 1854.400860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.132 3.868 3 H 0.032 0.968 4 C 0.053 3.947 5 O -0.398 6.398 6 C 0.037 3.963 7 C 0.142 3.858 8 N -0.593 5.593 9 C -0.249 4.249 10 H 0.072 0.928 11 C 0.000 4.000 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.289 1.289 17 H 0.053 0.947 18 H 0.041 0.959 19 H 0.064 0.936 20 H 0.078 0.922 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.027 0.973 25 H 0.092 0.908 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -1.280 6.037 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 H 0.050 0.950 4 C -0.026 4.026 5 O -0.317 6.317 6 C -0.041 4.041 7 C 0.016 3.984 8 N -0.318 5.318 9 C -0.379 4.379 10 H 0.090 0.910 11 C -0.199 4.199 12 N -0.550 5.550 13 Si 0.733 3.267 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.216 1.216 17 H 0.072 0.928 18 H 0.060 0.940 19 H 0.083 0.917 20 H 0.096 0.904 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.110 0.890 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.282 -1.197 5.996 6.247 hybrid contribution -0.585 -0.519 -1.016 1.282 sum -1.867 -1.716 4.979 5.588 Atomic orbital electron populations 1.21750 0.95583 1.01420 1.00639 1.21132 0.93512 0.94562 0.88248 0.95049 1.23041 0.81843 0.99348 0.98319 1.87762 1.22233 1.72768 1.48890 1.23318 0.98341 0.93618 0.88828 1.21401 0.84405 0.98405 0.94179 1.44180 1.04184 1.65429 1.17997 1.19245 0.93274 1.39420 0.85946 0.91011 1.25109 0.97615 1.00134 0.97001 1.70038 1.20478 1.46117 1.18346 0.86213 0.79607 0.79251 0.81663 1.20250 1.21697 1.21573 0.92795 0.93972 0.91732 0.90386 0.93949 0.94236 0.90321 0.95517 0.89032 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.95 37.16 0.30 -2.31 15 2 C 0.13 2.91 3.69 -67.42 -0.25 2.66 15 3 H 0.03 0.73 8.14 -51.94 -0.42 0.31 15 4 C 0.05 1.03 6.29 37.31 0.23 1.26 15 5 O -0.40 -8.46 10.74 -35.23 -0.38 -8.84 15 6 C 0.04 0.77 6.98 37.31 0.26 1.03 15 7 C 0.14 3.54 5.42 -3.53 -0.02 3.53 15 8 N -0.59 -15.37 3.04 -164.31 -0.50 -15.87 15 9 C -0.25 -6.86 8.70 -15.06 -0.13 -6.99 15 10 H 0.07 1.91 6.23 -52.49 -0.33 1.59 15 11 C 0.00 -0.01 4.97 -17.43 -0.09 -0.09 15 12 N -0.91 -26.57 11.18 55.49 0.62 -25.95 15 13 Si 0.90 21.74 29.58 -169.99 -5.03 16.72 15 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 17 H 0.05 1.03 7.62 -51.93 -0.40 0.63 15 18 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 19 H 0.06 1.32 7.52 -51.93 -0.39 0.93 15 20 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.04 0.81 8.14 -51.92 -0.42 0.39 15 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.09 2.47 6.24 -51.93 -0.32 2.15 15 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 212.77 15.07 3.21 3.21 Total: -1.00 -30.06 212.77 -5.31 -35.37 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.53 Total: -3.73 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.31 Total: -0.91 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.12 Total: -41.82 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.38 Total: -8.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -30.06 -5.31 -35.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035237082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.458 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds