Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00377 * 2 1 4 4 H 1.48496 * 109.47049 * 270.00215 * 3 2 1 5 5 H 1.48500 * 109.47013 * 29.99795 * 3 2 1 6 6 H 1.48498 * 109.47378 * 150.00130 * 3 2 1 7 7 C 1.37877 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.42892 * 113.99923 * 179.97438 * 10 9 7 12 12 H 1.08995 * 112.99317 * 326.55204 * 11 10 9 13 13 C 1.53737 * 113.70955 * 194.99900 * 11 10 9 14 14 C 1.51508 * 86.60696 * 245.60271 * 13 11 10 15 15 O 1.21286 * 134.17647 * 180.02562 * 14 13 11 16 16 N 1.35834 * 91.65293 * 359.97438 * 14 13 11 17 17 H 0.97001 * 119.99818 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.47253 * 60.00114 * 9 7 2 19 19 H 1.09001 * 109.47184 * 299.99919 * 9 7 2 20 20 H 1.09004 * 113.68660 * 0.02807 * 13 11 10 21 21 H 1.08996 * 113.68917 * 131.16966 * 13 11 10 22 22 H 0.96995 * 132.38213 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 2.1794 -3.5854 0.0015 11 6 1.5648 -4.8754 0.0031 12 1 0.6265 -4.8993 0.5572 13 6 2.5268 -6.0180 0.3672 14 6 2.3259 -6.5177 -1.0489 15 8 2.7519 -7.4613 -1.6807 16 7 1.4798 -5.4935 -1.3322 17 1 -0.4850 0.8401 -0.0004 18 1 0.6239 -2.5575 -0.8880 19 1 0.6246 -2.5563 0.8920 20 1 3.5440 -5.6850 0.5739 21 1 2.1369 -6.6927 1.1292 22 1 0.9901 -5.2527 -2.1341 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036458571.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -86.067968 kcal Electronic energy + Delta-G solvation = -9510.997643 eV Core-core repulsion = 7452.013631 eV Total energy + Delta-G solvation = -2058.984012 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.48987 -38.59901 -36.65995 -34.77562 -29.91746 -29.07464 -24.98554 -24.29213 -20.66133 -18.98020 -18.27404 -18.06438 -17.59564 -16.60229 -15.61015 -15.36891 -15.06506 -13.96888 -13.69869 -13.35097 -12.90979 -12.76419 -12.48000 -12.05348 -11.41368 -11.30868 -11.04891 -10.47339 -10.41959 -8.34176 -6.45973 1.39431 1.42218 1.42834 1.55122 2.31728 2.35707 2.89576 3.00816 3.06694 3.83388 4.14105 4.64821 4.74208 4.89852 5.11789 5.30087 5.53404 5.83816 5.91697 6.42371 6.74488 7.25023 7.26833 8.77213 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.114763 B = 0.009388 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 243.921761 B = 2981.834308 C = 3047.211125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.979 3.021 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.206 3.794 10 O -0.392 6.392 11 C 0.275 3.725 12 H 0.121 0.879 13 C -0.145 4.145 14 C 0.529 3.471 15 O -0.556 6.556 16 N -0.752 5.752 17 H 0.271 0.729 18 H -0.009 1.009 19 H 0.006 0.994 20 H 0.127 0.873 21 H 0.160 0.840 22 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -6.287 2.420 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.080 0.920 9 C 0.131 3.869 10 O -0.307 6.307 11 C 0.133 3.867 12 H 0.138 0.862 13 C -0.185 4.185 14 C 0.316 3.684 15 O -0.433 6.433 16 N -0.419 5.419 17 H 0.080 0.920 18 H 0.009 0.991 19 H 0.024 0.976 20 H 0.145 0.855 21 H 0.178 0.822 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.710 -6.574 2.142 7.123 hybrid contribution -0.470 1.018 -0.728 1.337 sum 1.240 -5.556 1.414 5.865 Atomic orbital electron populations 1.70037 1.07552 1.28699 1.50249 1.25867 0.95929 1.03161 0.93934 0.85238 0.78517 0.77398 0.78632 1.19753 1.19938 1.18848 1.21390 0.94208 0.90898 1.52501 0.92004 1.19999 0.88463 0.83876 0.94540 1.87951 1.35849 1.14151 1.92705 1.23589 0.97806 0.83707 0.81631 0.86164 1.23982 1.03475 0.95073 0.95961 1.22411 0.75911 0.80060 0.90038 1.90703 1.55830 1.31568 1.65241 1.49761 1.47563 1.27728 1.16840 0.92002 0.99081 0.97637 0.85509 0.82223 0.76217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.92 13.29 21.45 0.28 -52.64 14 2 C 0.01 0.56 5.46 84.65 0.46 1.03 14 3 Si 0.98 42.65 29.54 68.60 2.03 44.67 14 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 14 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 14 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 14 7 C -0.55 -31.02 9.43 25.60 0.24 -30.78 14 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 14 9 C 0.21 10.47 5.61 71.24 0.40 10.87 14 10 O -0.39 -16.95 10.50 -148.98 -1.56 -18.52 14 11 C 0.27 8.59 5.23 86.35 0.45 9.04 14 12 H 0.12 3.24 8.02 -2.39 -0.02 3.23 14 13 C -0.15 -3.50 8.12 30.37 0.25 -3.25 14 14 C 0.53 16.68 9.85 87.64 0.86 17.55 14 15 O -0.56 -21.21 18.03 -3.05 -0.05 -21.27 14 16 N -0.75 -23.50 7.42 -569.59 -4.23 -27.73 14 17 H 0.27 14.43 8.31 -92.71 -0.77 13.66 14 18 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 14 19 H 0.01 0.30 8.14 -2.39 -0.02 0.28 14 20 H 0.13 2.99 8.14 -2.38 -0.02 2.97 14 21 H 0.16 2.49 8.14 -2.39 -0.02 2.47 14 22 H 0.40 11.89 8.96 -92.71 -0.83 11.06 14 Total: -1.00 -65.94 209.46 -0.47 -66.41 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.40 Total: 4.62 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 2.66 Total: 4.45 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -3.94 Total: -80.37 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.62 Total: -39.79 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -65.94 -0.47 -66.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036458571.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.656 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds