Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00528 * 2 1 4 4 H 1.48503 * 109.47007 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.46902 * 29.99603 * 3 2 1 6 6 H 1.48496 * 109.47473 * 149.99394 * 3 2 1 7 7 C 1.38811 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00370 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.43584 * 56.09252 * 11 10 9 13 13 C 1.54818 * 110.60143 * 178.71208 * 11 10 9 14 14 C 1.55000 * 102.09030 * 139.61635 * 13 11 10 15 15 O 1.44382 * 103.48861 * 322.97548 * 14 13 11 16 16 C 1.43745 * 106.97554 * 40.06459 * 15 14 13 17 17 H 0.97008 * 119.99698 * 0.02562 * 1 2 3 18 18 H 0.97000 * 119.99703 * 0.02562 * 9 7 2 19 19 H 1.09007 * 109.46825 * 59.99695 * 10 9 7 20 20 H 1.09004 * 109.47198 * 300.00527 * 10 9 7 21 21 H 1.08996 * 110.90598 * 257.81304 * 13 11 10 22 22 H 1.09001 * 110.90139 * 21.38407 * 13 11 10 23 23 H 1.08999 * 110.61711 * 204.48002 * 14 13 11 24 24 H 1.08997 * 110.62057 * 81.47966 * 14 13 11 25 25 H 1.08998 * 109.87927 * 92.91125 * 16 15 14 26 26 H 1.08997 * 109.87512 * 214.06102 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 0.0012 12 1 0.3828 -4.7388 -0.8463 13 6 1.8107 -6.1752 -0.0314 14 6 0.9735 -7.0310 0.9532 15 8 0.5997 -6.0906 1.9829 16 6 0.2752 -4.8546 1.3248 17 1 -0.4850 0.8401 -0.0004 18 1 0.3554 -2.3880 -0.0002 19 1 2.6845 -3.7146 0.8906 20 1 2.6845 -3.7146 -0.8894 21 1 1.7928 -6.6053 -1.0328 22 1 2.8351 -6.0633 0.3237 23 1 1.5774 -7.8370 1.3703 24 1 0.0883 -7.4301 0.4580 25 1 -0.7946 -4.8133 1.1202 26 1 0.5673 -4.0127 1.9524 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038094086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = -65.824802 kcal Electronic energy + Delta-G solvation = -9951.312619 eV Core-core repulsion = 8029.039510 eV Total energy + Delta-G solvation = -1922.273108 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.38771 -36.73755 -34.15935 -32.11053 -30.02404 -26.93707 -24.78675 -23.04115 -21.40611 -19.21223 -17.53515 -16.89544 -16.66183 -15.87339 -15.30635 -15.13467 -14.67347 -13.66902 -13.37840 -13.21228 -12.81730 -12.45522 -12.20838 -12.10343 -11.96303 -11.69364 -11.52330 -10.96958 -10.59725 -9.03882 -7.97658 -5.27386 1.46916 1.49009 1.57656 2.54688 3.05540 3.35883 3.57606 3.79933 3.97909 4.19691 4.32274 4.45405 4.59654 4.80290 4.83370 4.88063 4.98152 5.07057 5.16146 5.31405 5.46631 5.95614 6.24751 7.30947 8.05065 8.29424 9.26045 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.105861 B = 0.010072 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.433495 B = 2779.425427 C = 2891.599330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.125 4.125 12 H 0.084 0.916 13 C -0.139 4.139 14 C 0.042 3.958 15 O -0.404 6.404 16 C 0.057 3.943 17 H 0.253 0.747 18 H 0.375 0.625 19 H 0.017 0.983 20 H 0.027 0.973 21 H 0.103 0.897 22 H 0.079 0.921 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -12.012 -0.461 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.144 4.144 12 H 0.102 0.898 13 C -0.177 4.177 14 C -0.034 4.034 15 O -0.324 6.324 16 C -0.020 4.020 17 H 0.061 0.939 18 H 0.207 0.793 19 H 0.035 0.965 20 H 0.045 0.955 21 H 0.122 0.878 22 H 0.097 0.903 23 H 0.131 0.869 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.945 -11.958 -0.226 12.317 hybrid contribution -0.143 1.242 -0.200 1.266 sum 2.802 -10.717 -0.426 11.085 Atomic orbital electron populations 1.69817 1.06684 1.26250 1.59296 1.25605 0.96444 1.01232 1.03380 0.85094 0.77660 0.79169 0.77544 1.21153 1.22045 1.19456 1.19662 0.91576 0.85426 1.41663 0.90669 1.42594 1.05676 1.01198 1.89477 1.20824 0.93576 0.84414 0.97703 1.22668 0.97887 0.95893 0.97915 0.89810 1.23141 0.99849 0.92877 1.01804 1.23792 0.98561 0.92541 0.88499 1.88816 1.88603 1.22518 1.32447 1.23108 0.98554 0.86732 0.93584 0.93861 0.79339 0.96495 0.95544 0.87815 0.90251 0.86932 0.90883 0.92282 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.06 21.65 0.28 -59.83 15 2 C -0.07 -4.34 5.50 84.86 0.47 -3.87 15 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 15 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 15 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 15 9 N -0.75 -38.95 5.33 -343.46 -1.83 -40.78 15 10 C 0.16 6.63 5.38 86.38 0.46 7.09 15 11 C -0.12 -4.08 3.11 -9.81 -0.03 -4.11 15 12 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 13 C -0.14 -3.34 6.71 31.90 0.21 -3.12 15 14 C 0.04 0.96 7.72 72.67 0.56 1.53 15 15 O -0.40 -13.19 11.52 -148.98 -1.72 -14.91 15 16 C 0.06 2.00 7.07 72.35 0.51 2.51 15 17 H 0.25 15.10 8.31 -92.70 -0.77 14.33 15 18 H 0.37 20.58 7.52 -92.71 -0.70 19.88 15 19 H 0.02 0.72 8.14 -2.38 -0.02 0.70 15 20 H 0.03 1.07 8.14 -2.38 -0.02 1.05 15 21 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.08 1.90 7.88 -2.39 -0.02 1.89 15 23 H 0.11 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 26 H 0.06 2.64 7.57 -2.39 -0.02 2.63 15 Total: -1.00 -65.46 222.35 2.25 -63.22 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.46 Total: 17.23 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 3.03 Total: -13.54 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -1.55 Total: -100.61 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.72 Total: -14.91 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -65.46 2.25 -63.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038094086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.609 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds